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Landmark or Region: Examples: PvScaf3, PvScaf33, Pv.00001, Pv.00002, Glycoside, hydrolase.	Annotate Restriction Sites Download Decorated FASTA File Download Sequence File Download Track Data
Data Source P. vanderplanki [version 0.91]	Scroll/Zoom:     Show 558 bp Show 200 bp Show 100 bp     Flip

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 Overview

 

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 Region

 

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 Details

 

  Gene (AUGUSTUS)  

  Gene model (AUGUSTUS: transcript)  

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 DNA

 DNA

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6-frame translation

DNA/GC Content

 Gene model (AUGUSTUS)

 Gene model (AUGUSTUS)

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Gene (AUGUSTUS)

Gene model (AUGUSTUS: transcript)

 General

 General

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mRNAs in public DB

Pv Sanger ESTs aligned by GMAP

PvFosmid-end

 Polulation

 Polulation

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Short reads coverage [Malawi population]

 RNA-seq based transcript (Tophat + Cufflinks)

 RNA-seq based transcript (Tophat + Cufflinks)

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RNA-seq based transcript [adult stage (female)]	RNA-seq based transcript [larvae stage]	RNA-seq based transcript [PvD48: desiccation 48h]
RNA-seq based transcript [adult stage (male)]	RNA-seq based transcript [pupae stage]	RNA-seq based transcript [PvR24: desiccation 24h]
RNA-seq based transcript [adult stage]	RNA-seq based transcript [PvD0: desiccation 0h]	RNA-seq based transcript [PvR3: desiccation 3h]
RNA-seq based transcript [egg stage]	RNA-seq based transcript [PvD24: desiccation 24h]

 RNA-seq based transcript (candidate for ncRNA; no ORF)

 RNA-seq based transcript (candidate for ncRNA; no ORF)

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RNA-seq based transcript (no ORF) [adult stage]	RNA-seq based transcript (no ORF) [pupae stage]	RNA-seq based transcript (no ORF) [PvD48]
RNA-seq based transcript (no ORF) [egg stage]	RNA-seq based transcript (no ORF) [PvD0]	RNA-seq based transcript (no ORF) [PvR24]
RNA-seq based transcript (no ORF) [larvae stage]	RNA-seq based transcript (no ORF) [PvD24]	RNA-seq based transcript (no ORF) [PvR3]

 RNA-seq reads coverage

 RNA-seq reads coverage

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RNA-seq reads coverage [PvAdult: adult]	RNA-seq reads coverage [PvD48: desiccation 48h]	RNA-seq reads coverage [PvPupae: pupae]
RNA-seq reads coverage [PvD0: desiccation 0h]	RNA-seq reads coverage [PvEgg: egg]	RNA-seq reads coverage [PvR24: rehydration 24h]
RNA-seq reads coverage [PvD24: desiccation 24h]	RNA-seq reads coverage [PvLarvae: larvae]	RNA-seq reads coverage [PvR3: rehydration 3h]

 Repeat sequence

 Repeat sequence

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Repeat sequence [RepBase]

 Analysis

 Analysis

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Restriction Sites

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