Browser Select Tracks Snapshots Custom Tracks Preferences

 Search

 Search

Landmark or Region: Examples: PvScaf3, PvScaf33, Pv.00001, Pv.00002, Glycoside, hydrolase.	Annotate Restriction Sites Download Decorated FASTA File Download Sequence File Download Track Data
Data Source P. vanderplanki [version 0.91]	Scroll/Zoom:     Show 200 kbp Show 100 kbp Show 50 kbp Show 20 kbp Show 10 kbp Show 5 kbp Show 2.375 kbp Show 2 kbp Show 1 kbp Show 200 bp Show 100 bp     Flip

 Overview

 Overview

 

 Region

 Region

 

 Details

 Details

 

  Gene (AUGUSTUS)  

  Gene model (AUGUSTUS: transcript)  

Clear highlighting

<< Back to Browser Show Active Tracks Only Show Favorites Only Clear All Favorites

 Tracks

 Tracks

 

 DNA

 DNA

 All on All off 

6-frame translation

DNA/GC Content

 Gene model (AUGUSTUS)

 Gene model (AUGUSTUS)

 All on All off 

Gene (AUGUSTUS)

Gene model (AUGUSTUS: transcript)

 General

 General

 All on All off 

mRNAs in public DB

Pv Sanger ESTs aligned by GMAP

PvFosmid-end

 Polulation

 Polulation

 All on All off 

Short reads coverage [Malawi population]

 RNA-seq based transcript (Tophat + Cufflinks)

 RNA-seq based transcript (Tophat + Cufflinks)

 All on All off 

RNA-seq based transcript [adult stage (female)]	RNA-seq based transcript [larvae stage]	RNA-seq based transcript [PvD48: desiccation 48h]
RNA-seq based transcript [adult stage (male)]	RNA-seq based transcript [pupae stage]	RNA-seq based transcript [PvR24: desiccation 24h]
RNA-seq based transcript [adult stage]	RNA-seq based transcript [PvD0: desiccation 0h]	RNA-seq based transcript [PvR3: desiccation 3h]
RNA-seq based transcript [egg stage]	RNA-seq based transcript [PvD24: desiccation 24h]

 RNA-seq based transcript (candidate for ncRNA; no ORF)

 RNA-seq based transcript (candidate for ncRNA; no ORF)

 All on All off 

RNA-seq based transcript (no ORF) [adult stage]	RNA-seq based transcript (no ORF) [pupae stage]	RNA-seq based transcript (no ORF) [PvD48]
RNA-seq based transcript (no ORF) [egg stage]	RNA-seq based transcript (no ORF) [PvD0]	RNA-seq based transcript (no ORF) [PvR24]
RNA-seq based transcript (no ORF) [larvae stage]	RNA-seq based transcript (no ORF) [PvD24]	RNA-seq based transcript (no ORF) [PvR3]

 RNA-seq reads coverage

 RNA-seq reads coverage

 All on All off 

RNA-seq reads coverage [PvAdult: adult]	RNA-seq reads coverage [PvD48: desiccation 48h]	RNA-seq reads coverage [PvPupae: pupae]
RNA-seq reads coverage [PvD0: desiccation 0h]	RNA-seq reads coverage [PvEgg: egg]	RNA-seq reads coverage [PvR24: rehydration 24h]
RNA-seq reads coverage [PvD24: desiccation 24h]	RNA-seq reads coverage [PvLarvae: larvae]	RNA-seq reads coverage [PvR3: rehydration 3h]

 Repeat sequence

 Repeat sequence

 All on All off 

Repeat sequence [RepBase]

 Analysis

 Analysis

 All on All off 

Restriction Sites

Snapshots

Snapshot Name

Snapshot Timestamp [GMT]

Custom Tracks

[Help with uploading custom tracks]

There are no tracks yet.

Add custom tracks : [From text] [From a URL] [From a file]

Show grid	Image Width 450 640 800 1024	Highlight feature(s) (feature1 feature2...) Clear highlighting
Cache tracks		Highlight regions (region1:start..end region2:start..end) Clear highlighting
Show tooltips		Region Size (bp) 200000 20000 10000 5000 1000

The Generic Genome Browser. For questions about the data at this site, please contact its webmaster. For support of the browser software only, send email to gmod-gbrowse@lists.sourceforge.net or visit the GMOD Project web pages.