MidgeBase gene description page [Pn.17205]
Outline
| Gene ID | Pn.17205 |
| Type | Protein coding gene |
| Scaffold | PnScaf50947 |
| Start | 154 |
| End | 856 |
| Direction | - |
Sequence
Transcript: 588 (bp)
ATGTGGGTCGGCCTCAGTCAAATTCGCGCTCTTTTGCCCGTGCAGATGTGCCAAGAGGAAGAGGAGTTGATGCGCAAGCGGCTGTGGAAGCTCGTCAACAATCACACCTTCTTCCAGCATCCCGATCTCATCCGAGTTCTGCGCGTCCACGAGAACGTCATGGCCGTCATGATGAACACGCTCGGCCGTCGTGCGCAAGCACAGAGTGACACGCCTTCGGGCGAGGGCGCCGAGGGAGCGCCGGTCAAGGAGAAAGACACCTCGCACGAAATGGTCGTCGCTTGCTGTCGCTTCTTGTGTTACTTCTGTCGCACGGGCAGACAAAATCAGAAGGCGATGTTCGATCACTTTGACTTCTTGCTGGAAAATTCAAACATTTTGCTGTCGCGCCCGAGCTTGCGCGGCTCAACTCCGCTCGACGTCGCATACTCGAGTTTGATGGAAAACACCGAGCTGGCTTTGGCTCTTCGCGAGCACTATTTGGAGAAAATCGCGATTTACTTGTCGCGCTGCGGTCTTCAGAGCAATTCCGAGCTGGTCGAGAAGGGCTATCCGGATTTGGAAGACCCGAGTGTCTCGGCCCTGCTC
Protein: 196 (aa)
MWVGLSQIRALLPVQMCQEEEELMRKRLWKLVNNHTFFQHPDLIRVLRVHENVMAVMMNTLGRRAQAQSDTPSGEGAEGAPVKEKDTSHEMVVACCRFLCYFCRTGRQNQKAMFDHFDFLLENSNILLSRPSLRGSTPLDVAYSSLMENTELALALREHYLEKIAIYLSRCGLQSNSELVEKGYPDLEDPSVSALL
| Type | Start | End | Length |
| CDS |
157 |
182 |
26 |
| CDS |
295 |
856 |
562 |
| intron |
183 |
294 |
112 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002089690 |
GE19231 [Drosophila yakuba] gb|EDW89402.1| GE19231 [Drosophila yakuba] |
1e-101 |
| InterPro |
IPR000699 |
Intracellular calcium-release channel |
|
| InterPro |
IPR015925 |
Ryanodine receptor-related |
|
| Gene Ontology(BP) |
GO:0070588 |
calcium ion transmembrane transport |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(MF) |
GO:0005262 |
calcium channel activity |
|
| Pfam |
PF01365.16 |
RIH domain |
5.7e-59 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes