MidgeBase gene description page [Pn.17138]
Outline
| Gene ID | Pn.17138 |
| Type | Protein coding gene |
| Scaffold | PnScaf49488 |
| Start | 432 |
| End | 1212 |
| Direction | + |
Sequence
Transcript: 729 (bp)
ATGATCGACGACATCCCCTCGGGCACGTTCCTCAACAAGAAGCACCTGCGCAAGATCTTCCTCGCCGGCAACCTCATCAAGCGCCTCCAGATCACCTCGCTCATCGTCTCCAAGTTCGACATCCTGCGCGAGCCGCCCGAGATCTTCCTCGCCGGCAACCCCCTCCACTGCGACTGCCACCTCGAGTGGCTGCGCAACGTCAACGAGCTCAGCGAGCAGCGCCGCCAGCTCCCCCGGCTCCTCGACATGAACCGCATCAAGTGCACCATGGAGCACAGCCACGAGGCCGTCAAGAACTCCAACGCCGACGCCGAGGTCGCCATCAAGCCCTTCAGCGAGCTCAGCTCCAACGACTTCCTCTGCAAGTACGACAGCCACTGCCACACGCTCTGCCAGTGCTGCCGCGACAACGGCGACGCCGCCAACGACGAAAACTCGAGTGACGCCGATGACGATGAGGACGAGCAGGAGCGGGAGGAGTGCAAGTGCAAGATGACGTGCCCCGACCAGTGCTCGTGCTTCCACGACAACACGTGGAACAAGAACATCGTGGACTGCGGCAACGCGAACCTGCAGACGTTCCCGCCGCGCGTGCCCATCGACGTGACGACCTTCTACCTCGACGGCAACAACCTGACGCACCTGACGCACCACCACTTCGCCGGCAAGAACCGCCTCGAGGTGCTCTTCCTCAACGACAGCAACGTGCACTCGATCGCGAACGGGACC
Protein: 243 (aa)
MIDDIPSGTFLNKKHLRKIFLAGNLIKRLQITSLIVSKFDILREPPEIFLAGNPLHCDCHLEWLRNVNELSEQRRQLPRLLDMNRIKCTMEHSHEAVKNSNADAEVAIKPFSELSSNDFLCKYDSHCHTLCQCCRDNGDAANDENSSDADDDEDEQEREECKCKMTCPDQCSCFHDNTWNKNIVDCGNANLQTFPPRVPIDVTTFYLDGNNLTHLTHHHFAGKNRLEVLFLNDSNVHSIANGT
| Type | Start | End | Length |
| CDS |
432 |
1159 |
728 |
| CDS |
1209 |
1209 |
1 |
| intron |
1160 |
1208 |
49 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001648238 |
toll [Aedes aegypti] gb|EAT44679.1| toll [Aedes aegypti] |
3e-56 |
| Pfam |
PF13855.1 |
Leucine rich repeat |
3.2e-07 |
| Pfam |
PF12799.2 |
Leucine Rich repeats (2 copies) |
0.028 |
| Pfam |
PF00560.28 |
Leucine Rich Repeat |
0.22 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.15361 |