MidgeBase gene description page [Pn.17078]
Outline
| Gene ID | Pn.17078 |
| Type | Protein coding gene |
| Scaffold | PnScaf48105 |
| Start | 594 |
| End | 1589 |
| Direction | + |
Sequence
Transcript: 870 (bp)
ATGAAACACTTTCAGATACCGGACTCGAGTGAGGGAAAAGCGTGGTATAGCTACGTTGACGAAAACGTGACTTTGGATACACTGAAAAAACTGACTGATGAATATTTACAAATCTTAGAACGTAGTCCCTCTAAATTCAAGAGCAAAATGAAAGCGATCACATCGAATGGTCAAGCAACAATAAGTCAAACACTAAGCTATTCTGGCTCTGGCGAAACGTCTTCGTCTGCATCGCGTCACAGTAATCATCACCACCACCATCATCACCGAAGTAGTAGCAGTGCTGCTGCCGGTTCAAGTAGTGGTGTTGCGTCCTCATCTGGCATGGCAGCACCGAACAGCAACGGAAGCAGTCGAAATCCATCATCGTCGTCGTCGTCGTCATCGAAGGTTCAATTTCATCAAATGTCATCAAATTCAGCATACAAACAACAAGTTCCTTCACAACAGCAGCAGCCGGGAGCGTCGATTCCCGTTGTTTCTGGATCATCATCGTCATCTTCCTCCTCTCACATGCATCGTCCAAGGCCCTCCTCGTCCTCCGCTTCGTCGACGAATAATCAGCAAATGTATGGCAGTAACATGCCTAGCAGTAGTAGTCAACAAAAACTAGACGAAAGACAGCGAATGATGCATCAAGATGGATATTACAGTTCATCGTCCGCACAACGCATGTCTGATCACAAACAGCACCGAATGAGCTCGAGCTCATCCTCGCAACAGCAGCAGCAGCAACAACAACAGCAAAGTGCGGCGCATATGCAAGCTCCTTACATGAAATCCAATCCGAACATAAATGATCAAAAGCAACATAATGTGATGTTAAATAATGCAAGCAAACAGGGAAATCCAGCGCAGCAGCAGCAACAG
Protein: 290 (aa)
MKHFQIPDSSEGKAWYSYVDENVTLDTLKKLTDEYLQILERSPSKFKSKMKAITSNGQATISQTLSYSGSGETSSSASRHSNHHHHHHHRSSSSAAAGSSSGVASSSGMAAPNSNGSSRNPSSSSSSSSKVQFHQMSSNSAYKQQVPSQQQQPGASIPVVSGSSSSSSSSHMHRPRPSSSSASSTNNQQMYGSNMPSSSSQQKLDERQRMMHQDGYYSSSSAQRMSDHKQHRMSSSSSSQQQQQQQQQQSAAHMQAPYMKSNPNINDQKQHNVMLNNASKQGNPAQQQQQ
| Type | Start | End | Length |
| CDS |
594 |
773 |
180 |
| CDS |
835 |
1508 |
674 |
| CDS |
1571 |
1586 |
16 |
| intron |
774 |
834 |
61 |
| intron |
1509 |
1570 |
62 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_316716 |
AGAP006678-PA [Anopheles gambiae str. PEST] gb|EAA11502.3| AGAP006678-PA [Anopheles gambiae str. PEST] |
9e-13 |
| Pfam |
PF04652.11 |
Vta1 like |
0.7 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.16921 |