MidgeBase gene description page [Pn.17022]
Outline
| Gene ID | Pn.17022 |
| Type | Protein coding gene |
| Scaffold | PnScaf46706 |
| Start | 10019 |
| End | 11128 |
| Direction | - |
Sequence
Transcript: 795 (bp)
ATGACTAATTTAACTGAATATTACAATCAGATTGTCTACGTTCATTCTGATCCTCGTTCAAGGGGATGGTTTCTCATCGATTCGCCCTGGATGATTTTCAATATTTTTACAATGTACTTTGGTATGATCTACTATGGGACGAAGCTAATGAAAAACCGGGAGCCTTTCAAACTCAACACAATACTAATGGTCTACAACTTTTTCACAGTCATGCTAAATTTATATATTTTTTGCCAAATGACCACCGCATTCATACGGCAAAACTACAACTTTACTTGCGTTCATTGTCAGCAAGCATGGAGTGGTGAAGAAATGAGAATCGTAAAAGCGTCATGGTGGTTCTTCGTATCGAAACTTATTGAATTCTGTGATTCACTGTTTTTCATATTGAGGAAAAAGAACAACCAGTTGTCACTTCTGCACACCTATCATCATTCTACAATGTTTGTTGTATGCTGGGCGTTTGTAAAATGGTCACCGTGTGGAGGACCCCACATCAATACACCACTAGCCAATTCATTGATCCACGTACTGATGTACTCGTATTACGGATTAGCTGCTAGTGGGCCGAGAGTTCAAAAGTTTCTGTGGTGGAAAAAATATCTGACACGCGCTCAACTTACTCAGTTTGTTTTTGTTTTGTCTACAAATATTATCTCAATTTTTGCTGGCTGCAGAAATCCGCCATATGTTGAGTACTTCATAAGTGGATACGCAATTTCGTTTTTGGTACTTTTCACACATTTTTATTATGTCGAATATCTCAAGAAACGTACAGAGAAGACAAAAGTCTTG
Protein: 265 (aa)
MTNLTEYYNQIVYVHSDPRSRGWFLIDSPWMIFNIFTMYFGMIYYGTKLMKNREPFKLNTILMVYNFFTVMLNLYIFCQMTTAFIRQNYNFTCVHCQQAWSGEEMRIVKASWWFFVSKLIEFCDSLFFILRKKNNQLSLLHTYHHSTMFVVCWAFVKWSPCGGPHINTPLANSLIHVLMYSYYGLAASGPRVQKFLWWKKYLTRAQLTQFVFVLSTNIISIFAGCRNPPYVEYFISGYAISFLVLFTHFYYVEYLKKRTEKTKVL
| Type | Start | End | Length |
| CDS |
10022 |
10087 |
66 |
| CDS |
10148 |
10255 |
108 |
| CDS |
10317 |
10444 |
128 |
| CDS |
10502 |
10676 |
175 |
| CDS |
10732 |
10894 |
163 |
| CDS |
10974 |
11128 |
155 |
| intron |
10088 |
10147 |
60 |
| intron |
10256 |
10316 |
61 |
| intron |
10445 |
10501 |
57 |
| intron |
10677 |
10731 |
55 |
| intron |
10895 |
10973 |
79 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001648136 |
elongase, putative [Aedes aegypti] gb|EAT44716.1| elongase, putative [Aedes aegypti] |
1e-62 |
| InterPro |
IPR002076 |
GNS1/SUR4 membrane protein |
|
| Gene Ontology(CC) |
GO:0016021 |
integral to membrane |
|
| Pfam |
PF02554.9 |
Carbon starvation protein CstA |
0.085 |
| Pfam |
PF01151.13 |
GNS1/SUR4 family |
2.7e-56 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes