MidgeBase gene description page [Pn.17021]
Outline
| Gene ID | Pn.17021 |
| Type | Protein coding gene |
| Scaffold | PnScaf46706 |
| Start | 6468 |
| End | 7356 |
| Direction | - |
Sequence
Transcript: 717 (bp)
ATGACGACTTTCTTGGATCAGTACTATGAGGCAATAAACAACCGATCAGATTCTCGCATCAGAGGTTGGTTCCTCATGGACTCGCCGTGGCCAGCAATCAACGCCCTTGCACTGTATTTTCTGATGATCTACTACGGTCCGAAGATAATGGAAAAGCGGAAACCATTCAAGCTCAACGGACTGTTGGTAGTCTACAATTTTTCAATGGTTGCCCTCAATCTATTTATTTTCTGCGAATATATGACGGCCTACACACGGTTGAACTACAACTTAACTTGTGTGCCATGTCGCGAAATCTCTTCTCCTGAAGAGATGAGGATGGTTAGGGCAACATGGTGGTACTTCTTCTCAAAATTAATCGAATTTAGCGACTCACTGTTCTTCATTCTGAGAAAAAAGAACAGTCAGCTGTCATTTCTGCATGTCTACCACCACTCAACTATGTTTGGAATCTATTGGGCAATAGCCAAGTGGTATCCATCCGGATCTCCTCATTGCATCACACCAATTGTCAATTCATTTATTCACGTGCTGATGTACTCTTACTATGGGTTGTCTGCGTTCGGGCCAAAAATACAAAAGTACCTCTGGTGGAAAAAGTACATGACAGTTGCTCAACTAGTCAGTATAAGTTGTTATTTTAGATTGAATATTTCGAGGAATTACGTCTACTGTTTAAACACCTTTTTATTTCAAAGATTCAGTTTGCGATCATTT
Protein: 239 (aa)
MTTFLDQYYEAINNRSDSRIRGWFLMDSPWPAINALALYFLMIYYGPKIMEKRKPFKLNGLLVVYNFSMVALNLFIFCEYMTAYTRLNYNLTCVPCREISSPEEMRMVRATWWYFFSKLIEFSDSLFFILRKKNSQLSFLHVYHHSTMFGIYWAIAKWYPSGSPHCITPIVNSFIHVLMYSYYGLSAFGPKIQKYLWWKKYMTVAQLVSISCYFRLNISRNYVYCLNTFLFQRFSLRSF
| Type | Start | End | Length |
| CDS |
6471 |
6694 |
224 |
| CDS |
6750 |
6924 |
175 |
| CDS |
6982 |
7144 |
163 |
| CDS |
7202 |
7356 |
155 |
| intron |
6695 |
6749 |
55 |
| intron |
6925 |
6981 |
57 |
| intron |
7145 |
7201 |
57 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001648136 |
elongase, putative [Aedes aegypti] gb|EAT44716.1| elongase, putative [Aedes aegypti] |
6e-62 |
| InterPro |
IPR002076 |
GNS1/SUR4 membrane protein |
|
| Gene Ontology(CC) |
GO:0016021 |
integral to membrane |
|
| Pfam |
PF01151.13 |
GNS1/SUR4 family |
5.3e-48 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes