MidgeBase gene description page [Pn.17013]
Outline
| Gene ID | Pn.17013 |
| Type | Protein coding gene |
| Scaffold | PnScaf46468 |
| Start | 24093 |
| End | 28013 |
| Direction | + |
Sequence
Transcript: 3180 (bp)
ATGATTTGCTCTCATACGATCGCGGCTGAAGTGATAATCGTGTTCTTGCTAGTAAATCTCGTGAAAATTACATCAAATTTCAGCTATGAAATCGAAGCAAAGTTCTTGTATCAGCTCGACAGAGGCTGCAAAAACATCGACATCCGCTTTCATGTCGGTTATTTTGAGAAGTTGAAAAATTGCAAATCTGTGCACGGATTTCTCAGAATTTCTGATATGGAAATTCCCAAAGATTTTCAAAACTTGACATTTAGTGATCTCGAAGAAATTACTGGATATTTTCTGATGGACAGCGTGGCTGGTTTGCAGTCACTGTCCACTTTATTTCCAAAGCTGAAATCAATCGGAGGAGAACTGTTGTATCATGGCTGCGCTTTTGTGATAACAAATAATGCTGACCTTGAAATTGGTTTGAAATCGCTGATTTCTATAGGAAATGGAAATGTGTGCGTAGAAAATAACGCCAAACTTTCCTTCGTGAAGACTATTGATTGGAATCGCTTGAGGCAGAACATATCGGTGATCAGCAAGAACAATTCTAATAAAACGATCGCATGTGCAAGTGATTTCTGCTGGGGAAACGACGTTTCTCAGACAATTTGTGACGACAGCATGAAAAATAGTGATGAATGCTCACTATGCTCGAAGCTAGTCTTAATAAAAGAGGATGACATTGTGTGCACAGACCACGAAATATTGGCTTTTGAACTTGAAAATCGCTTTCTCGTGAGTGCCGAGACTTGCGATCAAATGGGACGAACGAGATTGGATGATCAGTGCTTGAGAAGGGACGAGTGTCCGATAGATGAAGGTCACTTTTATAACATTTCGCAGAATGCATGCTTGTTCTCGCCTAGCAGCCTCAAAAATTGCTCGATAGTCATTAAAAGCAGGAAAGACTTGTACGACTTCTCGATCTTTGACTGCAACATTGCAAACCGTTTTGAGATTAGCAACGTCGAGGACAGTCTTGAGTTCGATGTGCAAAAGATGATTGACGAAAAATTGCAATATTTAGTTGAGATAAAAGGCTGCCTTATTGTGAGGAATTCCTCGGCCATTGATAGTTTGGCGTTTTTGAAGAGATTAAGAAAAATCAGTGGCAGTTGCACAGAAGGCGACGAAACATTTTCCGTTTTGATAGCGGACAATAGAAACTTGCACACGTTTATTCCCAGTAAATTTGGCAGTGCAATAAAAAATCATGGAAGAATAATTGTGAGGAATAGTGAAAATTTGTGCTATGAGCAGTTAAATTTAGCCAAAACTGTCTTCAAAAACTTGACTGAGGCTGACATTCAAGAAGATGAATGCTTAATTGGAAACCTAAACATTAAAGTTATCGTCAGAAATGATTCAGCACTGATTTTATTCGACACAGCTTTAGTTAAGAGCTTCAAGTTCACACTCAAATTATGGAGCAGCTTTATGGAGCAATCTATTGAGGTTGTGAATAATCACTGTGAAGTTAAAAATCTCACTGCCGACACAGTTTATGCCTTCAAATTTGAGGCTTTGAATGAAAATGGAATTAAAATCTTCGACTCAAAATATTATTTCATGGAAACTCTTAAATCAAACCAATTTCTTGCTGAACATTACCTAAAAGAAATTGAATCACACAAAATTTCACTGGAATTTCCTGAAATGCACGATCTGAGAAATAATGAGGTGGAAGATTACAATTTGTATGCAACCTACAAGAGCATGGATGAGGTTTATTGCAGCAACGTGACAGAAATTGAGGTTAAGAGTGACAATTGGTTTGACAAAGATACAAGGCCATTCCATCAATACTTTCCCAAAGATCCTCGATCGATGGTTGATGATTTCAATAAAACCAGGCATCAAATTTTTCCTTACAAGTCACAGATTACTCTTTCGAACCTCACCGATCAAACATGCTATAAAATTGAAGTTTATCCTTGCATCATGACCAATGGGATGTTCTGCTATTCGTCCAAGACAATCGCCAGCAAAACAGCAGCTGAAAACGTTTTAAAGCCTTTTTCTAGCGATTTCGACCTAGTGGACCGCAAAATAGCCTTTGACGCAGAAATCATAAAAATTTCTGAGAATGCAGCAGTCGACTCATCTAAAAAATTCGTTTCAATCATAATCACAGTTTCTGTCGTCATCATCGCCATTCCCGTCATGTTCTTCTACACTTACAAAATCTATACCAAAATTCAGGTTCAGCCACCGACAGCTGAAATCGAAATGGCGGAGCGAAAAACAAAAGACGAGTTTGAGGTTGATCGCGAAAATATTGTGATGTCGAAAGTCATAGGAAAAGGAGAGTTTGGCGTAGTCTACAGAGGATTCATCAAGCCAAACGAGGACACATTTTATGCGATCAAAAAGCTGTCGGAATTGAACGAATGTTACGAGGACAATTTTCTCAAAGAAGCTCAGTTCATGAGGAAATTTAGAGCGCACCATGTGGTGAAACTCATCGGATACTGCACGAGTGGAAAGCCTCTTTTGGTTATCATGGAGCTAATGGTGCATGGAGATCTCAAGAAGTTTTTGCAAAACAATCGCCCAACTGAAAAAAGACCAGAGACAAAGCTGGCGAGCAGCAGCTACACGACTGCTCCTGCTGTAAAAAAACCTCTGCATCCCATTCGACCTGTGGCCGAGATGGCGATAGAAATCGCTGATGGGATGATGTACTTGGAGAACATGAAGTTCATTCATTGCGACCTCGCTTGCCGAAACTGCATGGTTCACGAGAGCTACACAATCAAAATTGGAGACTTCGGGATGGCTCGCGAGCTCTACCACTCCGACTATTACAAGCCAGGGTCAAGGAACAAAAAAATCCCTCTAAGGTGGATGTCGCCAGAAGCTTTGGGCAGCGATACAATCATGGCGAGATACACAAGCAAAAGCGATGTGTTTAGCTTCGGAATCGTCTTGTACGAGCTGGTGACTTATTGCGAGAAGCCTTACGCCTCATATGGCGACGATCAGGTCATTCAGATGATAAAGAGTGGCATAACCATGGAGGCACCAAAGGATTGCGACGAAAAAATCTCCGAACTGATGGCCAAATGTTGGCGATTCAATCCCGATGAGAGAGCAACGTTTAAGGAGATTATTGAGTTTCTTTCAAGCCACTTTGTAATTAGAGACAGCTTTAAGGACGTGTCATTTTATCACAACGGCACTCTTGAT
Protein: 1060 (aa)
MICSHTIAAEVIIVFLLVNLVKITSNFSYEIEAKFLYQLDRGCKNIDIRFHVGYFEKLKNCKSVHGFLRISDMEIPKDFQNLTFSDLEEITGYFLMDSVAGLQSLSTLFPKLKSIGGELLYHGCAFVITNNADLEIGLKSLISIGNGNVCVENNAKLSFVKTIDWNRLRQNISVISKNNSNKTIACASDFCWGNDVSQTICDDSMKNSDECSLCSKLVLIKEDDIVCTDHEILAFELENRFLVSAETCDQMGRTRLDDQCLRRDECPIDEGHFYNISQNACLFSPSSLKNCSIVIKSRKDLYDFSIFDCNIANRFEISNVEDSLEFDVQKMIDEKLQYLVEIKGCLIVRNSSAIDSLAFLKRLRKISGSCTEGDETFSVLIADNRNLHTFIPSKFGSAIKNHGRIIVRNSENLCYEQLNLAKTVFKNLTEADIQEDECLIGNLNIKVIVRNDSALILFDTALVKSFKFTLKLWSSFMEQSIEVVNNHCEVKNLTADTVYAFKFEALNENGIKIFDSKYYFMETLKSNQFLAEHYLKEIESHKISLEFPEMHDLRNNEVEDYNLYATYKSMDEVYCSNVTEIEVKSDNWFDKDTRPFHQYFPKDPRSMVDDFNKTRHQIFPYKSQITLSNLTDQTCYKIEVYPCIMTNGMFCYSSKTIASKTAAENVLKPFSSDFDLVDRKIAFDAEIIKISENAAVDSSKKFVSIIITVSVVIIAIPVMFFYTYKIYTKIQVQPPTAEIEMAERKTKDEFEVDRENIVMSKVIGKGEFGVVYRGFIKPNEDTFYAIKKLSELNECYEDNFLKEAQFMRKFRAHHVVKLIGYCTSGKPLLVIMELMVHGDLKKFLQNNRPTEKRPETKLASSSYTTAPAVKKPLHPIRPVAEMAIEIADGMMYLENMKFIHCDLACRNCMVHESYTIKIGDFGMARELYHSDYYKPGSRNKKIPLRWMSPEALGSDTIMARYTSKSDVFSFGIVLYELVTYCEKPYASYGDDQVIQMIKSGITMEAPKDCDEKISELMAKCWRFNPDERATFKEIIEFLSSHFVIRDSFKDVSFYHNGTLD
| Type | Start | End | Length |
| CDS |
24093 |
24623 |
531 |
| CDS |
24683 |
24859 |
177 |
| CDS |
24916 |
25652 |
737 |
| CDS |
25718 |
25989 |
272 |
| CDS |
26054 |
27094 |
1041 |
| CDS |
27466 |
27541 |
76 |
| CDS |
27604 |
27727 |
124 |
| CDS |
27789 |
28010 |
222 |
| intron |
24624 |
24682 |
59 |
| intron |
24860 |
24915 |
56 |
| intron |
25653 |
25717 |
65 |
| intron |
25990 |
26053 |
64 |
| intron |
27095 |
27465 |
371 |
| intron |
27542 |
27603 |
62 |
| intron |
27728 |
27788 |
61 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
ADB22426 |
insulin-like growth factor receptor [Saccoglossus kowalevskii] |
5e-71 |
| InterPro |
IPR017441 |
Protein kinase, ATP binding site |
|
| InterPro |
IPR002290 |
Serine/threonine- / dual-specificity protein kinase, catalytic domain |
|
| InterPro |
IPR000494 |
EGF receptor, L domain |
|
| InterPro |
IPR001245 |
Serine-threonine/tyrosine-protein kinase catalytic domain |
|
| InterPro |
IPR011009 |
Protein kinase-like domain |
|
| InterPro |
IPR000719 |
Protein kinase, catalytic domain |
|
| InterPro |
IPR008266 |
Tyrosine-protein kinase, active site |
|
| InterPro |
IPR020635 |
Tyrosine-protein kinase, catalytic domain |
|
| Gene Ontology(BP) |
GO:0006468 |
protein phosphorylation |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(MF) |
GO:0004713 |
protein tyrosine kinase activity |
|
| Gene Ontology(MF) |
GO:0005524 |
ATP binding |
|
| Gene Ontology(MF) |
GO:0004672 |
protein kinase activity |
|
| Gene Ontology(MF) |
GO:0016772 |
transferase activity, transferring phosphorus-containing groups |
|
| Pfam |
PF00069.20 |
Protein kinase domain |
8.4e-41 |
| Pfam |
PF01030.19 |
Receptor L domain |
2e-28 |
| Pfam |
PF00041.16 |
Fibronectin type III domain |
0.0011 |
| Pfam |
PF07714.12 |
Protein tyrosine kinase |
5.2e-81 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes