MidgeBase gene description page [Pn.17010]
Outline
| Gene ID | Pn.17010 |
| Type | Protein coding gene |
| Scaffold | PnScaf46468 |
| Start | 20270 |
| End | 21280 |
| Direction | + |
Sequence
Transcript: 756 (bp)
ATGGCTCCAACAGCAAAACCTGCTGAAAAGGGAAAGAAACTGCCCGCAGTTCCCGAATCAAAATTGAAGGATGGAAAACGTCGATTGGCGACTCGCGGAAAGTTGATTCTTCGCAAACGCATCATTAAGTCAAAGATCGCCCTTCGCCGTCGTCAAAACCTTGTTCGTGCCGAGAAGTACACACGCACTTACTTGAAATTGCAGAAGGATGTCATCGAACAAGCCCGTTCTGCAAAGAAAGCTGGAAATATTTACATCCCAGCTTATCCAAAAGTTGCTTTTGTTATTCGCATTCGTGGTGTCAACAAAGTAGCACCGAAAGTAAAGAAGGTTCTGCAACTTCTTCGCTTGCGTCAAATCAACAACGCCACTTTTGTCAAGTTGAATAAGGCAACACTCAATATGTTGCGCATCGCCCAGCCGTACATCACCTACGGATACCCAACTCTCAGAACAGTCCGCGACTTGATCTACAAGAGAGGATTCGTCAAGCACGGAGGTCGTCGCATTCCAATCACCGACAATTTTGTGATTGAGCGCAAACTGAAGAAGGGCTACAATGTTCAGTGCGTTGAGGACATGGTGTACCAGATCTACACATGCGGCCGAGTGTTCAAGCAGGTGAACAACTTCCTCTGGCCATTCAAGCTTAACACACCGACTGGCGGATGGCGCAAGAAGAACAACCACTTCGTCGAGGGCGGAGACTTTGGTAATCGCGAAGACAAAATCAATGAGCTCGTCCAGCGTATGGTT
Protein: 252 (aa)
MAPTAKPAEKGKKLPAVPESKLKDGKRRLATRGKLILRKRIIKSKIALRRRQNLVRAEKYTRTYLKLQKDVIEQARSAKKAGNIYIPAYPKVAFVIRIRGVNKVAPKVKKVLQLLRLRQINNATFVKLNKATLNMLRIAQPYITYGYPTLRTVRDLIYKRGFVKHGGRRIPITDNFVIERKLKKGYNVQCVEDMVYQIYTCGRVFKQVNNFLWPFKLNTPTGGWRKKNNHFVEGGDFGNREDKINELVQRMV
| Type | Start | End | Length |
| CDS |
20270 |
20568 |
299 |
| CDS |
20752 |
20944 |
193 |
| CDS |
21014 |
21277 |
264 |
| intron |
20569 |
20751 |
183 |
| intron |
20945 |
21013 |
69 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
ACU30885 |
60S ribosomal protein L7 [Ochlerotatus triseriatus] |
1e-102 |
| InterPro |
IPR012988 |
Ribosomal protein L30, N-terminal |
|
| InterPro |
IPR005998 |
Ribosomal protein L7, eukaryotic |
|
| InterPro |
IPR018038 |
Ribosomal protein L30, conserved site |
|
| InterPro |
IPR016082 |
Ribosomal protein L30, ferredoxin-like fold domain |
|
| Gene Ontology(BP) |
GO:0006412 |
translation |
|
| Gene Ontology(CC) |
GO:0005840 |
ribosome |
|
| Gene Ontology(CC) |
GO:0005622 |
intracellular |
|
| Gene Ontology(MF) |
GO:0003735 |
structural constituent of ribosome |
|
| Pfam |
PF00327.15 |
Ribosomal protein L30p/L7e |
1.6e-21 |
| Pfam |
PF08079.7 |
Ribosomal L30 N-terminal domain |
5.3e-11 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| B. mori |
BGIBMGA004375-TA |
| S. invicta |
SI2.2.0_12629 |
| A. mellifera |
GB10094-PA |
| A. aegypti |
AAEL012585 |
| T. castaneum |
TC002951 |
| M. musculus |
ENSMUSG00000043716 |
| H. melpomene |
HMEL016838-PA |
| C. quinquefasciatus |
CPIJ010020 |
| P. vanderplanki |
Pv.08186 |
| D. plexippus |
DPOGS213493PA |
| N. vitripennis |
NV14954-PA |
| D. melanogaster |
FBgn0005593 |
| A. gambiae |
AGAP008916 |
| H. sapiens |
ENSP00000339795 |
| P. humanus |
PHUM472890-PA |