MidgeBase gene description page [Pn.17006]
Outline
| Gene ID | Pn.17006 |
| Type | Protein coding gene |
| Scaffold | PnScaf46468 |
| Start | 9484 |
| End | 10791 |
| Direction | + |
Sequence
Transcript: 978 (bp)
ATGTCGAAAAATAACATCAAACATCAGAAGCAATCAAATTCATTGGCTGAAAGTTCTTTAATTGAGATAAAATCAAAGTTTGACGCAGAATTCCGACGATGGTCCATAAAGCGAAACCCCGAAAATAATCATACCTTCGATGACTTCTATTCAACAATTGAAAAGTTTCACAAGCTCGCAGGAGTACCATTTCTCATCTCCTATATAGATCCCCGCGATAACGATCTGTTGCCGATCAACAATGACGACAACTATCATCGAGCACTCACCACAGCAAGGCCGCTCCTGAGAATAATCATTCAGAAGAAAGGCGACAGCTTTGAGGATACGATGGGATACGGAACCATGCGACCGAAGAATCTGATAAGCACCCTGCTTGGTGGACAAACACCAATCAAGTCAAAAGCATTGGCCATCTCAAATCCGCACGATTTTCGTCAGGTTTCACAAATCATCGATGTTGACATCGTTCCGGAAACTTGTCGACGCGTACGACTGCTGAAGCATGGCAGCGACAAGCCGCTGGGATTTTACATTCGTGATGGGACGTCAGTAAAAGTCACAGCCAACGGAATTGAGAAGCAACCTGGAATTTTCATCTCCCGACTAGTGCCCGGCGGCCTCGCTGAATCAACAGGTCTTTTGGCGGTCAATGACGAAGTTCTCGAAGTGAATGGCATTGAAGTGCACGGAAAGACTCTGGATCAGGTCACTGACATGATGGTTGCAAATAGCTCAAATCTTATTATCACTGTAAAACCTGCAAATCAAAGGACGCTGGCAACGCCTCGTCGCGGCTCCTTCTCACGCAACAGTCAGCTGTCATCGGGTTCACATCAATCACATCACACAAACAACACAAACACATCGGACGAAAACGACCACGACGATCAAGACGAAGTTGTCGACTTAACGACGGGCATTGGTAACTTGGAGGAGAATAATCTGGTGGTAAACCAAAATGGTGTCTTGCATTTG
Protein: 326 (aa)
MSKNNIKHQKQSNSLAESSLIEIKSKFDAEFRRWSIKRNPENNHTFDDFYSTIEKFHKLAGVPFLISYIDPRDNDLLPINNDDNYHRALTTARPLLRIIIQKKGDSFEDTMGYGTMRPKNLISTLLGGQTPIKSKALAISNPHDFRQVSQIIDVDIVPETCRRVRLLKHGSDKPLGFYIRDGTSVKVTANGIEKQPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVHGKTLDQVTDMMVANSSNLIITVKPANQRTLATPRRGSFSRNSQLSSGSHQSHHTNNTNTSDENDHDDQDEVVDLTTGIGNLEENNLVVNQNGVLHL
| Type | Start | End | Length |
| CDS |
9484 |
9561 |
78 |
| CDS |
9631 |
9993 |
363 |
| CDS |
10171 |
10437 |
267 |
| CDS |
10519 |
10788 |
270 |
| intron |
9562 |
9630 |
69 |
| intron |
9994 |
10170 |
177 |
| intron |
10438 |
10518 |
81 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001657836 |
par-6 gamma [Aedes aegypti] gb|EAT41948.1| par-6 gamma [Aedes aegypti] |
1e-141 |
| InterPro |
IPR000270 |
Phox/Bem1p |
|
| InterPro |
IPR001478 |
PDZ domain |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF13180.1 |
PDZ domain |
0.016 |
| Pfam |
PF00564.19 |
PB1 domain |
1.4e-12 |
| Pfam |
PF00595.19 |
PDZ domain (Also known as DHR or GLGF) |
3.9e-12 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. aegypti |
AAEL006460 |
| H. sapiens |
ENSP00000343144 |
| B. mori |
BGIBMGA004440-TA |
| P. vanderplanki |
Pv.08182 |
| A. mellifera |
GB15893-PA |
| D. melanogaster |
FBgn0026192 |
| A. gambiae |
AGAP010494 |
| H. melpomene |
HMEL007961-PA |
| C. quinquefasciatus |
CPIJ008788 |
| M. musculus |
ENSMUSG00000044641 |
| M. musculus |
ENSMUSG00000056214 |
| S. invicta |
SI2.2.0_12179 |
| P. humanus |
PHUM551890-PA |
| D. plexippus |
DPOGS212227PA |
| N. vitripennis |
NV14834-PA |
| H. sapiens |
ENSP00000360672 |
| T. castaneum |
TC009924 |