MidgeBase gene description page [Pn.16997]
Outline
| Gene ID | Pn.16997 |
| Type | Protein coding gene |
| Scaffold | PnScaf46372 |
| Start | 591 |
| End | 1350 |
| Direction | + |
Sequence
Transcript: 687 (bp)
ATGAAGTTCTACTACAACCTGCTGTCGCAGCCATCGCGAGCCCTCTACATTCTCCTCAAAATGAGCCCGCAACTGGCGGTCGACTTCATTCCGGTTGATCTGCTGAATGGCGAGCACTTGGCCGACGATTTCAAGGCCGTCAACAGGTTCCAGAAGGTGCCGTGCATTGTCGAGGCGGACGGGTGGCAGCTGGCCGAAAGCATCGCCATTTTGAGGTATCTGACGACCACTCACGCGACCATTCCGGAGCACTTCTACCCGACGGAGACGCGAGCGCGCGCGGCAGTCGACGAGTACCTCGAGTGGCAGCACAACAACACCCGTCTCGGCTGCGCCATTTACTTCCAGATCAGGAAACGCATCGGCGCGTTCGCGGCCATTTCGGACGACCCCGAGGGCGGCGCGCTGCCGCTGTTCCGGTTTCTCATGGAGTCGACGCTCGACGCGATCGAGAGCTTGTGGCTGCGCGGCAAAAAGTTCATCGCGACCGAAACGTACGTGTCGTTTGCCGACATCATTGCGGCGTGCGAGATCGAGCAGCCGCGAATGGCCGGCTATGATGTGTTCGAGGGAAGGCCGCGGCTGCGGGAGTGGTATGAGAGGGTGAGGGCCGCCACTCAACCACACTACGACGACGCTCACGTCGTCGTGAACAAAATTGCGGCGCGGGCGCTGAAGGCGAAGATT
Protein: 229 (aa)
MKFYYNLLSQPSRALYILLKMSPQLAVDFIPVDLLNGEHLADDFKAVNRFQKVPCIVEADGWQLAESIAILRYLTTTHATIPEHFYPTETRARAAVDEYLEWQHNNTRLGCAIYFQIRKRIGAFAAISDDPEGGALPLFRFLMESTLDAIESLWLRGKKFIATETYVSFADIIAACEIEQPRMAGYDVFEGRPRLREWYERVRAATQPHYDDAHVVVNKIAARALKAKI
| Type | Start | End | Length |
| CDS |
591 |
805 |
215 |
| CDS |
876 |
1347 |
472 |
| intron |
806 |
875 |
70 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
ADK66968 |
glutathione s-transferase [Chironomus riparius] |
4e-67 |
| InterPro |
IPR004046 |
Glutathione S-transferase, C-terminal |
|
| InterPro |
IPR010987 |
Glutathione S-transferase, C-terminal-like |
|
| InterPro |
IPR017933 |
Glutathione S-transferase/chloride channel, C-terminal |
|
| InterPro |
IPR004045 |
Glutathione S-transferase, N-terminal |
|
| InterPro |
IPR012336 |
Thioredoxin-like fold |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF13409.1 |
Glutathione S-transferase, N-terminal domain |
9.2e-05 |
| Pfam |
PF13410.1 |
Glutathione S-transferase, C-terminal domain |
0.00092 |
| Pfam |
PF02798.15 |
Glutathione S-transferase, N-terminal domain |
1.7e-06 |
| Pfam |
PF13417.1 |
Glutathione S-transferase, N-terminal domain |
4e-06 |
| Pfam |
PF00043.20 |
Glutathione S-transferase, C-terminal domain |
1.6e-06 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.03703 |