MidgeBase gene description page [Pn.16964]
Outline
| Gene ID | Pn.16964 |
| Type | Protein coding gene |
| Scaffold | PnScaf45946 |
| Start | 10476 |
| End | 11654 |
| Direction | + |
Sequence
Transcript: 942 (bp)
ATGGCTAGCACTTCAAGTTCCAAAGACAGAGTTGTGTGCACTCACCATCCAGATGCTCCGCTCATCGAAGACTATCGTGCTGGTGATATGATTTGCTCAGAGTGTGGGTTGATTGTTGGCGACAGAGTAATTGACGTTGGATCGGAGTGGAGAACTTTCAGCAACGAAAAGGCTGGCGTTGATCCGTCTCGTGTTGGTGGTCCAGAAAACCCATTGCTTAGCGGCGGAGATTTATCAACGATGATTGGTCCAGGAACAGGAGCAGCCTCGTTTGACTCGTTTGGAAGTGCAAAATATCAAAATAGACGAACAATGAGCAGTTCAGATCGGGCACTGATAACTGCGTTCAAAGAAATCAGTTCAATGGCGGACCGCATTAATCTGCCAAAGACTATCGTTGACAGAGCAAACAATCTTTTCAAGCAGGTACATGACGGCAAAAGTCTCAAAGGACGATCAAATGACGCAAAAGCATCGGCATGCCTCTATATAGCGTGTCGTCAGGAGGGCGTGCCTCGAACATTCAAGGAAATTTGCGCAATCAGTCGAGTGAGCAAGAAGGAAATCGGACGATGCTTCAAACTGACGCTGAAAGCACTCGCCACCTCGGTCGATCTCATCACAACTGCCGATTTCATGTCACGTTTCTGCGCAAATCTTGTTCTGCCCAACTATGTACAACGTGCTGCGACTCACATTGCACGGAAGGCCGTCGAAATGGATATTGTTGCGGGCCGTTCGCCAATTTCTGTGGCAGCTGCTGCAATCTACATGGCATCACAAGCATCTGAAAACAAAAAGACACACAAGGAAATCGGTGATATTGCTGGCGTTGCCGAAGCGACCATTCGTCAATCCTACAAGTTGATGTACGGTCACGCAAAGGGACTCTTTCCTGATGATTTCCCGTTCGCAACTCCAATCGAACAGCTCCCGCTGTTG
Protein: 314 (aa)
MASTSSSKDRVVCTHHPDAPLIEDYRAGDMICSECGLIVGDRVIDVGSEWRTFSNEKAGVDPSRVGGPENPLLSGGDLSTMIGPGTGAASFDSFGSAKYQNRRTMSSSDRALITAFKEISSMADRINLPKTIVDRANNLFKQVHDGKSLKGRSNDAKASACLYIACRQEGVPRTFKEICAISRVSKKEIGRCFKLTLKALATSVDLITTADFMSRFCANLVLPNYVQRAATHIARKAVEMDIVAGRSPISVAAAAIYMASQASENKKTHKEIGDIAGVAEATIRQSYKLMYGHAKGLFPDDFPFATPIEQLPLL
| Type | Start | End | Length |
| CDS |
10476 |
10492 |
17 |
| CDS |
10594 |
10701 |
108 |
| CDS |
10774 |
10934 |
161 |
| CDS |
10996 |
11651 |
656 |
| intron |
10493 |
10593 |
101 |
| intron |
10702 |
10773 |
72 |
| intron |
10935 |
10995 |
61 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001848391 |
transcription initiation factor TFIIB [Culex quinquefasciatus] gb|EDS28248.1| transcription initiation factor TFIIB [Culex quinquefasciatus] |
1e-163 |
| InterPro |
IPR000812 |
Transcription factor TFIIB |
|
| InterPro |
IPR013150 |
Transcription factor TFIIB, cyclin-related |
|
| InterPro |
IPR013137 |
Zinc finger, TFIIB-type |
|
| InterPro |
IPR013763 |
Cyclin-like |
|
| InterPro |
IPR023486 |
Transcription factor TFIIB, conserved site |
|
| Gene Ontology(BP) |
GO:0006413 |
translational initiation |
|
| Gene Ontology(BP) |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
| Gene Ontology(BP) |
GO:0006352 |
transcription initiation, DNA-dependent |
|
| Gene Ontology(MF) |
GO:0003743 |
translation initiation factor activity |
|
| Gene Ontology(MF) |
GO:0008270 |
zinc ion binding |
|
| Pfam |
PF00382.14 |
Transcription factor TFIIB repeat |
6e-54 |
| Pfam |
PF00134.18 |
Cyclin, N-terminal domain |
6.4e-05 |
| Pfam |
PF02984.14 |
Cyclin, C-terminal domain |
0.003 |
| Pfam |
PF04545.11 |
Sigma-70, region 4 |
0.001 |
| Pfam |
PF05460.8 |
Origin recognition complex subunit 6 (ORC6) |
0.041 |
| Pfam |
PF08149.6 |
BING4CT (NUC141) domain |
0.045 |
| Pfam |
PF08271.7 |
TFIIB zinc-binding |
5.1e-12 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| C. quinquefasciatus |
CPIJ006843 |
| P. vanderplanki |
Pv.02922 |
| H. sapiens |
ENSP00000402345 |
| H. sapiens |
ENSP00000359531 |
| D. melanogaster |
FBgn0004915 |
| M. musculus |
ENSMUSG00000028271 |
| S. invicta |
SI2.2.0_13223 |
| A. mellifera |
GB18567-PA |
| N. vitripennis |
NV12842-PA |
| A. gambiae |
AGAP009558 |
| B. mori |
BGIBMGA006014-TA |
| H. melpomene |
HMEL009827-PA |
| A. aegypti |
AAEL005368 |
| T. castaneum |
TC010900 |
| D. plexippus |
DPOGS207630PA |
| P. humanus |
PHUM626400-PA |