MidgeBase gene description page [Pn.16944]
Outline
| Gene ID | Pn.16944 |
| Type | Protein coding gene |
| Scaffold | PnScaf45463 |
| Start | 18079 |
| End | 19920 |
| Direction | - |
Sequence
Transcript: 1512 (bp)
ATGGCGATGCAAGCTCATTCTAAGAAGCGTGTCTGCTATTATTACGATAGCGATATCGGAAACTATTATTATGGACAAGGCCATCCAATGAAGCCCCACCGAATTCGTATGACGCACAATTTACTGCTAAATTATGGTCTCTATCGAAAAATGGAAATCTATCGCCCTCACAAAGCGACACAAGATGAAATGACCAAATTTCACTCTGACGAATACATCAGATTTTTGCGCTCGATCCGACCCGACAACATGAACGAGTACTCGAAGCAAATGCAGAGGTTCAACGTCGGAGAAGATTGTCCCGTTTTCGACGGCCTCTACGAGTTCTGTCAATTATCAGCGGGCGGCTCTGTCGCGTCAGCAGTTAAATTAAACAAGCAGGCATCGGAGATTTGCATTAACTGGGGAGGCGGACTTCACCACGCGAAAAAGTCAGAAGCGTCCGGATTCTGTTATGTCAACGACATTGTTCTCGGAATTCTGGAATTGCTGAAATATCATCAGCGCGTCCTTTACATCGATATCGACGTCCATCACGGTGATGGCGTCGAAGAGGCTTTCTTCACCACCGATCGAGTCATGACCGTTAGTTTCCACAAATATGGCGAATATTTCCCGGGAACGGGCGACTTGAGAGACATTGGCGCCGGCAAAGGAAAATACTATGCCGTCAATATTCCGCTTCGCGACGGCATGGACGACGAATCGTATGAATCGATATTCGTACCGATCATGACGAAAGTTATGGAAACTTTCCAACCTTCGGCCGTCGTGTTGCAGTGCGGTGCCGATTCACTAACTGGCGATCGTCTCGGTTGCTTCAACCTCACCGTCAAAGGCCACGGAAAGTGCGTGGAGTTTGTCAAGAAATACAACCTTCCCTTCATGCTCCTCGGAGGAGGCGGCTACACAATCCGCAATGTGTCCAGATGCTGGACCTACGAGACTTCTGTCGCACTCAGCGTTGAAATTGCCAACGAACTGCCGTATAACGATTACTTTGAATATTTTGGTCCAGATTTCAAACTGCACATTTCGCCGTCAAACATGACAAATCTGAACACGACAGACTACCTGGACAAGGTCAAATCGCGACTTTTTGAAAATCTGAGGATGCTCCCGCATGCTCCGGGTGTTCAAGTGCAAGCAATTCCCGAGGATGGAATCAAAATGGACGTCGACGATCAAGATGGAGCCCCGGACACAGAAGAAGCCGATAAAGACGAACGCGTGCCGCAGTCCATCAAGGATAAGCGAATTATGGGCGATAATGAGTATTCAGATTCAGAAGATGAAGGCCCTCAAGGCGACGGCAGGCGAAATCGCGAATCTCACAAGAATCCAAGAAAGAAGCAGAAAACGGTAGGAGAAACGAAGGCCGAGGGTGAAGCCGTGAAAGAAGACAAACCCGAAGAAAAGGCAACCTCAGAGACTGCAACCGTCGAGAAAAAAGAGGAGAATGGAACGGCGACCAAAAAGGAAGAGTCAAATGAGCCGGTTACGTGTGAAACT
Protein: 504 (aa)
MAMQAHSKKRVCYYYDSDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATQDEMTKFHSDEYIRFLRSIRPDNMNEYSKQMQRFNVGEDCPVFDGLYEFCQLSAGGSVASAVKLNKQASEICINWGGGLHHAKKSEASGFCYVNDIVLGILELLKYHQRVLYIDIDVHHGDGVEEAFFTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIMTKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVKGHGKCVEFVKKYNLPFMLLGGGGYTIRNVSRCWTYETSVALSVEIANELPYNDYFEYFGPDFKLHISPSNMTNLNTTDYLDKVKSRLFENLRMLPHAPGVQVQAIPEDGIKMDVDDQDGAPDTEEADKDERVPQSIKDKRIMGDNEYSDSEDEGPQGDGRRNRESHKNPRKKQKTVGETKAEGEAVKEDKPEEKATSETATVEKKEENGTATKKEESNEPVTCET
| Type | Start | End | Length |
| CDS |
18082 |
19054 |
973 |
| CDS |
19130 |
19619 |
490 |
| CDS |
19872 |
19920 |
49 |
| intron |
19055 |
19129 |
75 |
| intron |
19620 |
19871 |
252 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001848775 |
histone deacetylase Rpd3 [Culex quinquefasciatus] gb|EDS29016.1| histone deacetylase Rpd3 [Culex quinquefasciatus] |
0.0 |
| InterPro |
IPR003084 |
Histone deacetylase |
|
| InterPro |
IPR023801 |
Histone deacetylase domain |
|
| InterPro |
IPR000286 |
Histone deacetylase superfamily |
|
| Gene Ontology(BP) |
GO:0016575 |
histone deacetylation |
|
| Gene Ontology(MF) |
GO:0004407 |
histone deacetylase activity |
|
| Pfam |
PF00850.14 |
Histone deacetylase domain |
1e-87 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000357621 |
| A. mellifera |
GB14923-PA |
| H. sapiens |
ENSP00000302967 |
| A. mellifera |
GB14706-PA |
| P. humanus |
PHUM260560-PA |
| T. castaneum |
TC002540 |
| M. musculus |
ENSMUSG00000019777 |
| A. gambiae |
AGAP006511 |
| D. plexippus |
DPOGS212747PA |
| P. humanus |
PHUM158460-PA |
| B. mori |
BGIBMGA013166-TA |
| N. vitripennis |
NV10046-PA |
| P. vanderplanki |
Pv.06159 |
| T. castaneum |
TC006104 |
| H. melpomene |
HMEL017795-PA |
| A. gambiae |
AGAP001143 |
| H. melpomene |
HMEL015764-PA |
| A. aegypti |
AAEL011117 |
| C. quinquefasciatus |
CPIJ006836 |
| H. sapiens |
ENSP00000430008 |
| C. quinquefasciatus |
CPIJ019172 |
| M. musculus |
ENSMUSG00000061062 |
| H. sapiens |
ENSP00000381331 |
| B. mori |
BGIBMGA011747-TA |
| M. musculus |
ENSMUSG00000028800 |
| P. vanderplanki |
Pv.05486 |
| D. melanogaster |
FBgn0015805 |
| A. aegypti |
AAEL004586 |
| D. plexippus |
DPOGS207273PA |
| H. sapiens |
ENSP00000362649 |
| C. quinquefasciatus |
CPIJ013384 |
| S. invicta |
SI2.2.0_01613 |
| M. musculus |
ENSMUSG00000024454 |
| H. sapiens |
ENSP00000430432 |
| H. sapiens |
ENSP00000362642 |
| D. melanogaster |
FBgn0025825 |
| N. vitripennis |
NV18066-PA |
| S. invicta |
SI2.2.0_02893 |