MidgeBase gene description page [Pn.16918]
Outline
| Gene ID | Pn.16918 |
| Type | Protein coding gene |
| Scaffold | PnScaf45192 |
| Start | 42687 |
| End | 45221 |
| Direction | - |
Sequence
Transcript: 1926 (bp)
ATGTTCTTGTTTGGAAATTCACAGTCACCGCTGGAAAGTGAAATAGAGAAAGCTACAAGCGAAAATAACACAACTGAGAAATGGTCGTTGATAATGGACATTTGTGATAAAATTGGAAGCAGTCAGGCGAACGCGAAAGAAAGCTTGAGGATCATAACAAAACGCCTTAATCATGCCGATCCTCATGTTGTTATGCAGGCTATAACGTTATTGGATGCATGTGTCAACAACTGCGGCAAAAATTATCATCTTGAAGTGGCGTCACGAGAGTTTGAGCTCGAGTTCAAGAAACTCGTCCAAAAGAGTGAACCTCAAGTGGCAAACAAGCTGAAACTGTGCTTGAAAAAGTGGGCCGAGGGAGACTTCAAAACCGATCCCCAGCTAAATCTGATTCCGACTCTATACAAGAAAATGAAACAAGAGGGACACGACTTCAACGAGCCGCAGACGACGGTGAAGAGAGAAGTCGAAAAAATTAGTGATCCAAATGTGGTGTCTAGTCAGCAAGAAGAGGACGATATTGCAAAGGCCATTGAACTCTCCCTCAAGGACGCAAATACGCCGAAAAAGAGTTTAGCTGCAGCCTCCTCGTCGCTTTATCCGTCGGTGAGCTCCTTGAGTAATAACAGCACAAGTGCATCAGCGACGACAGTAGCAGCGGCAGCTCCGGCACAAGAGCCTCGCAAAGTGCGCGCCCTCTACGACTTCGAGGCGGCCGAGGACAACGAATTGACCTTCAAAGCTGGCGAAGTGATTATGGTCATCGAGGAGTCGGATCCGAACTGGTGGCGCGGAACGAACCACCGAGGTGAAGGTTTCTTCCCCGCAAACTTCGTGACAGCTGACTTGAGTGCAGAGCCGGAGGATTTGTACAAGAAAGAGACGAGAAAGAGCAGCAAGTCGATCGACAACACACACGAGGAGCGTAAGCCCGAGCAGCCGGTCGAGATCAACGAGGAGGCCATCGATCGTCTCCTGTTTCTGCTCCACGAAGCCGATCCCGAAGATCCGTCACAGGACAGCGACGAGATGTTGAGGCTCGAGAACTTCGTCAACCAGATGGGACCGCTAATCGACTCGGAGCTGGAGCGCGTTGACAGGAAGCACGCTCAGCTCACGCAACTGAGCAGCGACTTGATTGACACGATCAACCTCTATCACAACCTCATGCGCGACACGGAGAAGGCGCCCATGCGAATGATGCCCAATAGCTTTGCGAGTCTGCCTGGCCGACAGTTTTATGCGAACAATGTTCCTTACGGAATGCCGCCCCAGCACATGGGCATGCCGCCCGATCAAATGAGTGCCGCTGCTTCTATGACGTTTTCACCTCAACAAATGCCGCCCGATGGCTTTCAGCAATTTCCGCTTGCGGGCATGCATCCAGCGCAGCATCACCAACAGCAGCAGCAGCATCAACAACAGCCACACATGAGTCAGAATCAAAATACTTCTTTGCCGCCCGAGCAAATGATGCAGCAATTCCCACAGCATCATCCGGGCATGATGGGTCAAATGCAAATGCCAGCCGGCATTTATCAAAACAACAACAACTCGATGCAACACCCGGATCCCTCGCGCGGAATTCCACCTCACGAAATGAACCAGATTCCATCTCAACTTCAACAGCCACCGCAACAACAACAACAACATCAGCAGCTGCAGCCTCATCCACAACAGCAGCAGCAACAACAATCGACTCAATTACCAGGAACGACATTCCCACAACAGAATCATAATTTAGGTAGTCAAACGAGCAATTTAATCGCCAATCAATTAAAGTCAATTAACATCGATTTCTTTTTTAGCTCAAAACTATTCGCTGCCACCTCTACAGCAACAGAATCAAATGATGGCTGCGCCGAACTTTCCAATGACCACAAATCAAATGATGCATCAGCCGACTCAGCCACAAATGCAACTCAA
Protein: 642 (aa)
MFLFGNSQSPLESEIEKATSENNTTEKWSLIMDICDKIGSSQANAKESLRIITKRLNHADPHVVMQAITLLDACVNNCGKNYHLEVASREFELEFKKLVQKSEPQVANKLKLCLKKWAEGDFKTDPQLNLIPTLYKKMKQEGHDFNEPQTTVKREVEKISDPNVVSSQQEEDDIAKAIELSLKDANTPKKSLAAASSSLYPSVSSLSNNSTSASATTVAAAAPAQEPRKVRALYDFEAAEDNELTFKAGEVIMVIEESDPNWWRGTNHRGEGFFPANFVTADLSAEPEDLYKKETRKSSKSIDNTHEERKPEQPVEINEEAIDRLLFLLHEADPEDPSQDSDEMLRLENFVNQMGPLIDSELERVDRKHAQLTQLSSDLIDTINLYHNLMRDTEKAPMRMMPNSFASLPGRQFYANNVPYGMPPQHMGMPPDQMSAAASMTFSPQQMPPDGFQQFPLAGMHPAQHHQQQQQHQQQPHMSQNQNTSLPPEQMMQQFPQHHPGMMGQMQMPAGIYQNNNNSMQHPDPSRGIPPHEMNQIPSQLQQPPQQQQQHQQLQPHPQQQQQQQSTQLPGTTFPQQNHNLGSQTSNLIANQLKSINIDFFFSSKLFAATSTATESNDGCAELSNDHKSNDASADSATNATQ
| Type | Start | End | Length |
| CDS |
42690 |
44291 |
1602 |
| CDS |
44360 |
44476 |
117 |
| CDS |
44558 |
44718 |
161 |
| CDS |
45176 |
45221 |
46 |
| intron |
44292 |
44359 |
68 |
| intron |
44477 |
44557 |
81 |
| intron |
44719 |
45175 |
457 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_316950 |
AGAP008494-PA [Anopheles gambiae str. PEST] gb|EAA12268.5| AGAP008494-PA [Anopheles gambiae str. PEST] |
1e-147 |
| InterPro |
IPR002014 |
VHS |
|
| InterPro |
IPR001452 |
Src homology-3 domain |
|
| InterPro |
IPR018205 |
VHS subgroup |
|
| InterPro |
IPR003903 |
Ubiquitin interacting motif |
|
| InterPro |
IPR008942 |
ENTH/VHS |
|
| Gene Ontology(BP) |
GO:0006886 |
intracellular protein transport |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF00790.14 |
VHS domain |
1.2e-38 |
| Pfam |
PF07653.12 |
Variant SH3 domain |
9.5e-13 |
| Pfam |
PF02809.15 |
Ubiquitin interaction motif |
0.0034 |
| Pfam |
PF01417.15 |
ENTH domain |
0.011 |
| Pfam |
PF00018.23 |
SH3 domain |
1.8e-17 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. mellifera |
GB12395-PA |
| A. aegypti |
AAEL002240 |
| A. gambiae |
AGAP008494 |
| T. castaneum |
TC014037 |
| P. vanderplanki |
Pv.07049 |
| D. plexippus |
DPOGS211052PA |
| P. humanus |
PHUM584200-PA |
| H. sapiens |
ENSP00000438073 |
| M. musculus |
ENSMUSG00000055371 |
| C. quinquefasciatus |
CPIJ003516 |
| M. musculus |
ENSMUSG00000026718 |
| S. invicta |
SI2.2.0_06981 |
| H. sapiens |
ENSP00000456885 |
| H. sapiens |
ENSP00000263904 |
| H. sapiens |
ENSP00000366746 |
| D. melanogaster |
FBgn0027363 |
| H. melpomene |
HMEL004334-PA |
| B. mori |
BGIBMGA003753-TA |
| N. vitripennis |
NV12406-PA |