MidgeBase gene description page [Pn.16888]
Outline
| Gene ID | Pn.16888 |
| Type | Protein coding gene |
| Scaffold | PnScaf44930 |
| Start | 100 |
| End | 3409 |
| Direction | + |
Sequence
Transcript: 1029 (bp)
ATGAGTGAAAGTTGCTTGATAACTGATCGCTCAATCAACGACTGCGTGTGCCCCTTCTGCAAAATGCCCGAGCTCCATGACTCCGACGAGGACACGATTCTCGAGTATTTTTCGAATCTCGACATTCTGCTGAAGAACATTCTGCAGCCCGACGTTCACGATCTCTTTCAGCGAAAGATACGTGACAGAGCGCTGTTGCGCGATCCGCACTTCAAGTGGTGTGTGCAGTGCTCGTCCGGCTTCTTCGCTCGTCCCAAACAACGGCGCTTGATTTGCCCAGATTGTGGCTCGGTGACATGCTCGAAGTGCAGGAAACCTTGGGAGAAGCAGCACGAAGGATTAACGTGTGAGCAATTCAGTGAATGGAAGGAGGCGAATGATCCTGATGCGAATGCCGAAATTGTAGCGAAGCACTTAAAACTGAACGGGATTGATTGTCCAAAATGCAAATTTCGCTATGACCTCGCCCGTGGCGGATGCATGCACTTTACGTGCACTCAATGCAAATACGAGTTCTGCTACGGCTGCAACAAGGAGTTCCTCATGGGCGCAAAGTGCAAGGTGTCGCCCTACTGCGCGAAGCTCGGATTGCACGCTCATCATCCCAGAAATTGTCTGTTTTACCTGCGTGACAAGGAGCCGCATGAGCTGCAGAGTCTTCTGACGATAAACAACATACCGTTCGACACGGAAGCGACACCGCCTGCGAGTGACGGAGCAAAAGCGCTCACAAAGTGCCCGATACAGCTGCAAAAGGAGACGCCATCGGGTCTGGTGGACACGATTTGCAACAACGACGTTGCAGAGGGACATGCCGGACTGTGTAGATGGCACTACGTGGAGTATTTGGTGTCGGTCGTCTACGAGGCGAACATCGATCCGCTGCCGATTTTGGATCTCACCGATTGCGTGCAGGAGCTGAGACGACGCGGCATTCCGCTGCCCGAACGAGGACCGTGGGACACGGACCCGATCTATCGCGAGATGTGCCAAAAAATTGTCAAAGAGCAAATCCCATTGGACTCGGAG
Protein: 343 (aa)
MSESCLITDRSINDCVCPFCKMPELHDSDEDTILEYFSNLDILLKNILQPDVHDLFQRKIRDRALLRDPHFKWCVQCSSGFFARPKQRRLICPDCGSVTCSKCRKPWEKQHEGLTCEQFSEWKEANDPDANAEIVAKHLKLNGIDCPKCKFRYDLARGGCMHFTCTQCKYEFCYGCNKEFLMGAKCKVSPYCAKLGLHAHHPRNCLFYLRDKEPHELQSLLTINNIPFDTEATPPASDGAKALTKCPIQLQKETPSGLVDTICNNDVAEGHAGLCRWHYVEYLVSVVYEANIDPLPILDLTDCVQELRRRGIPLPERGPWDTDPIYREMCQKIVKEQIPLDSE
| Type | Start | End | Length |
| CDS |
100 |
117 |
18 |
| CDS |
362 |
571 |
210 |
| CDS |
640 |
729 |
90 |
| CDS |
1545 |
1812 |
268 |
| CDS |
1945 |
2024 |
80 |
| CDS |
2111 |
2271 |
161 |
| CDS |
2830 |
2998 |
169 |
| CDS |
3374 |
3406 |
33 |
| intron |
118 |
361 |
244 |
| intron |
572 |
639 |
68 |
| intron |
730 |
1544 |
815 |
| intron |
1813 |
1944 |
132 |
| intron |
2025 |
2110 |
86 |
| intron |
2272 |
2829 |
558 |
| intron |
2999 |
3373 |
375 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_317727 |
AGAP007788-PA [Anopheles gambiae str. PEST] gb|EAA43969.3| AGAP007788-PA [Anopheles gambiae str. PEST] |
1e-154 |
| InterPro |
IPR002867 |
Zinc finger, C6HC-type |
|
| Gene Ontology(MF) |
GO:0008270 |
zinc ion binding |
|
| Pfam |
PF01485.16 |
IBR domain |
3.2e-11 |
| Pfam |
PF13717.1 |
zinc-ribbon domain |
0.24 |
| Pfam |
PF01363.16 |
FYVE zinc finger |
0.00069 |
| Pfam |
PF14369.1 |
zinc-finger |
0.018 |
| Pfam |
PF13719.1 |
zinc-ribbon domain |
0.27 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| T. castaneum |
TC014438 |
| N. vitripennis |
NV14535-PA |
| A. gambiae |
AGAP007788 |
| D. plexippus |
DPOGS211126PA |
| A. mellifera |
GB16174-PA |
| H. sapiens |
ENSP00000452972 |
| H. sapiens |
ENSP00000453574 |
| H. sapiens |
ENSP00000315112 |
| B. mori |
BGIBMGA003002-TA |
| H. sapiens |
ENSP00000372134 |
| C. quinquefasciatus |
CPIJ007110 |
| P. humanus |
PHUM464880-PA |
| H. sapiens |
ENSP00000457512 |
| P. vanderplanki |
Pv.11768 |
| H. melpomene |
HMEL017235-PA |
| M. musculus |
ENSMUSG00000047098 |
| S. invicta |
SI2.2.0_03853 |
| D. melanogaster |
FBgn0031857 |
| A. aegypti |
AAEL010147 |