MidgeBase gene description page [Pn.16861]
Outline
| Gene ID | Pn.16861 |
| Type | Protein coding gene |
| Scaffold | PnScaf44647 |
| Start | 4112 |
| End | 5345 |
| Direction | + |
Sequence
Transcript: 879 (bp)
ATGAAACTTCTGGTGGTTCTTTTGTTGGCGTGCGCCGTTTCGGCCGATTACTTTGCCGAGTTCGACTGGAGCAACGTGAAGCGAGTTGAGGAGCTGCCGGGCTTCTGGGACCGCGTTCATCCCGCATTCCGACCGCCCGCAAGATTCCACACAAGCCTCCGAACGAGACGCATCGTGAACGGACAAATTGCAGAGCCTCATCAGTTCCCATATCAAGCTGCACTCTTGTTCGTTTTCCCCGCCGGCACTGGACTCTGCGGTGGCGCTCTGATCTCGCGTCGCACCGTCCTCACCGCAGCTCACTGCGTTGATGTCGCCACTTCAGGAACGGTCATTTTGGGCGCTCACTTCATCAACGTAATCGAGCCAACACAGCAGAGAATTCCAGTTCCACGCGCCGGAATCGTCAACCATCCACAGTGGGACCCAAGCTTGATCCGCAATGACATCTCCGTCCTTCACCTGTCGCAGGAAGCAGTTCTGAACGATTTCGTTTCCTTGATCGACCTGCCACCACCCGAATCAGTCACAACCTTCGAGAACTTCGCCGCAACTGTCAGCGGCTGGGGACGATTTGACGACAACTTGCCGCAGTCCTCGGACGTCCTGCGATTCTACAGAGGCACAATCTTGGCACAGGCCAACTGCGTGCTGCGATTCCCAGGCATCGTTCAGCCAAGCAACATTTGCTTGTCGGGACTCAACAATGGTGGTGCTTGTCAAGGCGACTCGGGCGGACCTTTGACCACTACGTACAACGGTCGTCACACACACATCGGCATTGTTTCATTCGGACTGGCCGCCGGCTGTGAGCTCTTGTGGCCTTCGGTCTTTGCCAGGACCAGCTACTTCAACGATTGGATCACACAGAACACCGTC
Protein: 293 (aa)
MKLLVVLLLACAVSADYFAEFDWSNVKRVEELPGFWDRVHPAFRPPARFHTSLRTRRIVNGQIAEPHQFPYQAALLFVFPAGTGLCGGALISRRTVLTAAHCVDVATSGTVILGAHFINVIEPTQQRIPVPRAGIVNHPQWDPSLIRNDISVLHLSQEAVLNDFVSLIDLPPPESVTTFENFAATVSGWGRFDDNLPQSSDVLRFYRGTILAQANCVLRFPGIVQPSNICLSGLNNGGACQGDSGGPLTTTYNGRHTHIGIVSFGLAAGCELLWPSVFARTSYFNDWITQNTV
| Type | Start | End | Length |
| CDS |
4112 |
4409 |
298 |
| CDS |
4548 |
4742 |
195 |
| CDS |
4808 |
5023 |
216 |
| CDS |
5086 |
5191 |
106 |
| CDS |
5279 |
5342 |
64 |
| intron |
4410 |
4547 |
138 |
| intron |
4743 |
4807 |
65 |
| intron |
5024 |
5085 |
62 |
| intron |
5192 |
5278 |
87 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_308550 |
AGAP007252-PA [Anopheles gambiae str. PEST] gb|EAA04766.4| AGAP007252-PA [Anopheles gambiae str. PEST] |
8e-67 |
| InterPro |
IPR009003 |
Peptidase cysteine/serine, trypsin-like |
|
| InterPro |
IPR001314 |
Peptidase S1A, chymotrypsin-type |
|
| InterPro |
IPR001254 |
Peptidase S1/S6, chymotrypsin/Hap |
|
| InterPro |
IPR018114 |
Peptidase S1/S6, chymotrypsin/Hap, active site |
|
| Gene Ontology(BP) |
GO:0006508 |
proteolysis |
|
| Gene Ontology(MF) |
GO:0004252 |
serine-type endopeptidase activity |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF00089.21 |
Trypsin |
1.4e-46 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| T. castaneum |
TC012575 |
| T. castaneum |
TC012574 |
| T. castaneum |
TC014391 |
| T. castaneum |
TC013421 |
| T. castaneum |
TC010908 |
| T. castaneum |
TC010939 |
| T. castaneum |
TC010940 |
| T. castaneum |
TC010959 |
| D. plexippus |
DPOGS214044PA |
| T. castaneum |
TC016121 |
| T. castaneum |
TC010906-GA |
| P. humanus |
PHUM610340-PA |
| T. castaneum |
TC010911 |
| T. castaneum |
TC010929 |
| T. castaneum |
TC010932 |
| P. humanus |
PHUM610330-PA |
| T. castaneum |
TC010934 |
| T. castaneum |
TC010935 |
| T. castaneum |
TC010904 |
| P. vanderplanki |
Pv.07156 |
| T. castaneum |
TC010906 |
| T. castaneum |
TC010933 |
| T. castaneum |
TC010927 |
| T. castaneum |
TC010910 |
| T. castaneum |
TC010937 |
| T. castaneum |
TC014375 |
| T. castaneum |
TC010936 |
| T. castaneum |
TC010941 |
| T. castaneum |
TC010930 |
| T. castaneum |
TC010909 |
| T. castaneum |
TC030075 |
| T. castaneum |
TC010907 |
| P. humanus |
PHUM610350-PA |
| T. castaneum |
TC010938 |
| T. castaneum |
TC012573 |
| T. castaneum |
TC030074 |