MidgeBase gene description page [Pn.16792]
Outline
| Gene ID | Pn.16792 |
| Type | Protein coding gene |
| Scaffold | PnScaf43530 |
| Start | 27053 |
| End | 27538 |
| Direction | - |
Sequence
Transcript: 420 (bp)
ATGGTGCGCTTTAAAAATAGATATGTTCTTATGGAAATAAAGCCGAACAAAAAAACCTCGATATCGTCCAAAGAGCTGGCTGACACGCTAAAAAAAGCTGTGAAGAAGTATTTTGGTGATTTCGGCCTGGCTTCGGTGTCAAACTTGAACGTGAAGTTATTCTACGACAAACACAAGCTGGCAATAGTTAGAGTTGCTCATGGACCTCACAAGTTCTTGACGAGCATCATTCCACTACTGAAGACGGCAGGAAAAGAATTGGCTTCGTATCGAATAATTTATGTGGGAGCTACGATAAGGCAGTGCAAAAAATACATCATAAGCCATCAAAATGATGTGCTTAGGAAGATTTTTGCAGAAATCACTACCGAAATTGAAAGAAAAGCCCTCATTGAAGAATTGACGAAATCTCTGGAAATT
Protein: 140 (aa)
MVRFKNRYVLMEIKPNKKTSISSKELADTLKKAVKKYFGDFGLASVSNLNVKLFYDKHKLAIVRVAHGPHKFLTSIIPLLKTAGKELASYRIIYVGATIRQCKKYIISHQNDVLRKIFAEITTEIERKALIEELTKSLEI
| Type | Start | End | Length |
| CDS |
27056 |
27455 |
400 |
| CDS |
27519 |
27538 |
20 |
| intron |
27456 |
27518 |
63 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001661090 |
Pop5 protein, putative [Aedes aegypti] gb|EAT37144.1| Pop5 protein, putative [Aedes aegypti] |
2e-29 |
| InterPro |
IPR016819 |
Ribonuclease P/MRP protein, subunit Pop5 |
|
| InterPro |
IPR002759 |
Ribonuclease P/MRP protein subunit |
|
| Gene Ontology(BP) |
GO:0016070 |
RNA metabolic process |
|
| Gene Ontology(BP) |
GO:0008033 |
tRNA processing |
|
| Gene Ontology(CC) |
GO:0005634 |
nucleus |
|
| Gene Ontology(MF) |
GO:0004540 |
ribonuclease activity |
|
| Gene Ontology(MF) |
GO:0004526 |
ribonuclease P activity |
|
| Pfam |
PF08979.6 |
Domain of unknown function (DUF1894) |
0.16 |
| Pfam |
PF02500.10 |
Probable DNA packing protein, N-terminus |
0.045 |
| Pfam |
PF01900.14 |
Rpp14/Pop5 family |
4.7e-21 |
| Pfam |
PF04071.7 |
Cysteine-rich small domain |
0.036 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| C. quinquefasciatus |
CPIJ008960 |
| S. invicta |
SI2.2.0_02620 |
| H. melpomene |
HMEL012553-PA |
| H. sapiens |
ENSP00000350098 |
| D. plexippus |
DPOGS212168PA |
| T. castaneum |
TC012619 |
| D. melanogaster |
FBgn0036696 |
| A. gambiae |
AGAP005957 |
| M. musculus |
ENSMUSG00000060152 |
| A. mellifera |
GB10747-PA |
| P. humanus |
PHUM359900-PA |
| A. aegypti |
AAEL010832 |