MidgeBase gene description page [Pn.16741]
Outline
| Gene ID | Pn.16741 |
| Type | Protein coding gene |
| Scaffold | PnScaf42954 |
| Start | 4561 |
| End | 5093 |
| Direction | + |
Sequence
Transcript: 456 (bp)
ATGTCTCTCGTCATACCAGAAAAGTTTCAGCATATTTTGCGTATTATGAGTACCAACATTGATGGTAAACGCAAAGTTCCAGTCGCCATGACTGCCATCAAGGGTGTCGGTCGCCGCTACTCCCATGTTGTCCTCAGAAAAGCCGATGTCGACTGCGACAAGCGTGCCGGTGAATGTACCGAAGAGGAGGTCGAGAAGATCGTCACAATTATTTCCAATCCACGTCAATACAAAATTCCAGATTGGTTCCTCAACAGACAAAAGGACATCATTGACGGCAAATATTCACAGCTGACTTCATCGTTGGTCGACTCAAAGTTGCGTGAGGATTTGGAGCGTCTCAAGAAAATCCGTGCACATCGCGGTATGCGTCACTATTGGGGTCTGCGTGTTCGCGGTCAACACACAAAGACCACTGGTCGTCGCGGTCGCACAGTCGGTGTGTCGAAGAAGAAG
Protein: 152 (aa)
MSLVIPEKFQHILRIMSTNIDGKRKVPVAMTAIKGVGRRYSHVVLRKADVDCDKRAGECTEEEVEKIVTIISNPRQYKIPDWFLNRQKDIIDGKYSQLTSSLVDSKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKTTGRRGRTVGVSKKK
| Type | Start | End | Length |
| CDS |
4561 |
4749 |
189 |
| CDS |
4824 |
5090 |
267 |
| intron |
4750 |
4823 |
74 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001660320 |
40S ribosomal protein S18 [Aedes aegypti] gb|ABF18109.1| ribosomal protein S18 [Aedes aegypti] gb|EAT38346.1| 40S ribosomal protein S18 [Aedes aegypti] |
6e-77 |
| InterPro |
IPR018269 |
Ribosomal protein S13, conserved site |
|
| InterPro |
IPR010979 |
Ribosomal protein S13-like, H2TH |
|
| InterPro |
IPR001892 |
Ribosomal protein S13 |
|
| Gene Ontology(BP) |
GO:0006412 |
translation |
|
| Gene Ontology(CC) |
GO:0005840 |
ribosome |
|
| Gene Ontology(CC) |
GO:0005622 |
intracellular |
|
| Gene Ontology(MF) |
GO:0003723 |
RNA binding |
|
| Gene Ontology(MF) |
GO:0003735 |
structural constituent of ribosome |
|
| Gene Ontology(MF) |
GO:0003676 |
nucleic acid binding |
|
| Pfam |
PF00416.17 |
Ribosomal protein S13/S18 |
1e-39 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| D. melanogaster |
FBgn0010411 |
| H. sapiens |
ENSP00000393241 |
| B. mori |
BGIBMGA003197-TA |
| H. melpomene |
HMEL012481-PA |
| D. plexippus |
DPOGS211218PA |
| A. gambiae |
AGAP010375 |
| N. vitripennis |
NV17400-PA |
| A. aegypti |
AAEL009747 |
| P. vanderplanki |
Pv.17611 |
| M. musculus |
ENSMUSG00000069117 |
| H. sapiens |
ENSP00000403175 |
| A. mellifera |
GB12140-PA |
| H. sapiens |
ENSP00000211372 |
| T. castaneum |
TC014405 |
| P. humanus |
PHUM463880-PA |
| C. quinquefasciatus |
CPIJ014165 |
| H. sapiens |
ENSP00000412583 |
| H. sapiens |
ENSP00000416110 |
| M. musculus |
ENSMUSG00000008668 |