MidgeBase gene description page [Pn.16727]
Outline
| Gene ID | Pn.16727 |
| Type | Protein coding gene |
| Scaffold | PnScaf42661 |
| Start | 353 |
| End | 2329 |
| Direction | + |
Sequence
Transcript: 1227 (bp)
ATGAGCTTTTTTTGGAAATTGCTGACGTCATCGTCGGAGCACCTGCACGCGCAACTGGACGGCCGCATCCTCTTCAACTCGATCGACATAATTTTGCCGCCGGCGTGGCCCAACACGTGCGTCACCAACGGCACGGTGACGAGCTACAACGGCGCGCCGACCGACGTGCAGATCACGCGCACTCACCCGATCTTCGGCGACGACCTGTGGACGCAGCAGTCGGGCGGCTGCGGCGAGCGCGGCGACCAGATCTTCGTCAGCGAGCGCGCCATCCGCGACGCCTTCGAGAACGTCGACAAGAAGTTCACGACCGAGTTCATGAAGTACCGTTACGGCGTGTTCGACACGAGCGGCTTCGACGGCGACGCCATCTATCCCAAGTGCAGCGCCGCCAGCAGCGCCCTCTGCAGCGACGCGGCCGCCCTCGAAACTGCCGGCGCCTACAACAAGTACGCGCCCACCAAGCAGAACCAGCTGTGCGATCGGCGCAGCCGCATGGACGTCGTCCTCCGCAACGAGGACTTCAACAGCACGCAGCGCAGCACGGACTTCTACGCGCCGACCTTCAACTACGTGCGCAAGATGAGCACGCGCTACACCATCGTGGTCGACGACCATGCCGACATCGCCGTGCGCGACAGCTACGCCTTCCTGCGCGACGCCCTCCGCAAGTGGCTCGACAAGGACCTCAGCCATCGCGGCACCGAGGTCGGTATCGCGAGGGTCAGTGCTGTTGATGCCGCGCCCTCCATTCGCGCTATCGCCAGCACCAACGACGCCGACGAGGTGCTCGCAGCGCTTCCCTTCACGATCAGCAACAGGTTCGGCTTCGGTCGCTGCAACATCGCGTCCTCGATCGAGCGCAGCATCGGCCTGATGCGCGACCGCGTGAAAGTGCACGGCGACGCCATCAGCGCGATTGTCTTGGTCGCGCCCGGCATGTACAACTGCAGCGAGGAGGTCATGTCGCGGCTCGTCGAGCGCGCCCTCGAGGCGAACGTGAAGTTCGTGACGGTGAACTACCCGCGCATCGGACTCAACCGCGTGCCGATGGACGAGCTTGCCGTGCGCACCGGCGGACAGGCTTTCACGGTGATCGAGCGCAAGAGCAACGAGGAGCGCAGCCTGCTCACGACCTTCTTCGAGCTCACGAACGTTTTCATGGAAATCAGCGCCCTCTACCATCACGGCGACGCCTCCGACCTTCCCGTCGAGATCTACAGAAAT
Protein: 409 (aa)
MSFFWKLLTSSSEHLHAQLDGRILFNSIDIILPPAWPNTCVTNGTVTSYNGAPTDVQITRTHPIFGDDLWTQQSGGCGERGDQIFVSERAIRDAFENVDKKFTTEFMKYRYGVFDTSGFDGDAIYPKCSAASSALCSDAAALETAGAYNKYAPTKQNQLCDRRSRMDVVLRNEDFNSTQRSTDFYAPTFNYVRKMSTRYTIVVDDHADIAVRDSYAFLRDALRKWLDKDLSHRGTEVGIARVSAVDAAPSIRAIASTNDADEVLAALPFTISNRFGFGRCNIASSIERSIGLMRDRVKVHGDAISAIVLVAPGMYNCSEEVMSRLVERALEANVKFVTVNYPRIGLNRVPMDELAVRTGGQAFTVIERKSNEERSLLTTFFELTNVFMEISALYHHGDASDLPVEIYRN
| Type | Start | End | Length |
| CDS |
353 |
367 |
15 |
| CDS |
674 |
1444 |
771 |
| CDS |
1824 |
2260 |
437 |
| CDS |
2323 |
2326 |
4 |
| intron |
368 |
673 |
306 |
| intron |
1445 |
1823 |
379 |
| intron |
2261 |
2322 |
62 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001661191 |
ca-activated cl channel protein [Aedes aegypti] gb|EAT37040.1| ca-activated cl channel protein [Aedes aegypti] |
6e-73 |
| InterPro |
IPR013642 |
Chloride channel calcium-activated |
|
| Pfam |
PF08434.6 |
Calcium-activated chloride channel |
6.1e-12 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| M. musculus |
ENSMUSG00000068547 |
| M. musculus |
ENSMUSG00000074195 |
| H. sapiens |
ENSP00000234701 |
| H. sapiens |
ENSP00000359594 |
| M. musculus |
ENSMUSG00000028255 |
| M. musculus |
ENSMUSG00000037033 |
| P. humanus |
PHUM570100-PA |
| H. sapiens |
ENSP00000359596 |
| C. quinquefasciatus |
CPIJ009097 |
| A. gambiae |
AGAP004059 |
| M. musculus |
ENSMUSG00000036960 |
| H. sapiens |
ENSP00000378200 |
| M. musculus |
ENSMUSG00000056025 |
| T. castaneum |
TC006687 |
| C. quinquefasciatus |
CPIJ009092 |
| A. aegypti |
AAEL010924 |
| P. vanderplanki |
Pv.12267 |
| M. musculus |
ENSMUSG00000028262 |