MidgeBase gene description page [Pn.16725]
Outline
| Gene ID | Pn.16725 |
| Type | Protein coding gene |
| Scaffold | PnScaf42633 |
| Start | 50921 |
| End | 55778 |
| Direction | + |
Sequence
Transcript: 1182 (bp)
ATGAACCATGTGCAAGCAGTTACAGTCGTCGAAACGACAGCAACTCTCGACGAGAGCGCCAAAAATGTGAATAGCCAAACAAAGTCAAATGTGACAAAGCGAAATGTGTATAAGGATAGCAATAATAATGTGCAACAAATCACAAAAGAATCGCTTAATGTCGACAGTAGTAAGAGCGAGGATGAGCTCATGGAATACACGCTGCTCGGCTTCATCAAATTCAAGTCGCCCATCAAATGGCTCAACACAGTCTCCATCATCCTCATTCATCTCATTTTCCTCTTCGCTTTCGTCACATATCCTCTGCACGGCCGGATTTTGACCACGTTGTGGGGCTTCGTTGTGGGCGGAATCTGTGGTTTCGGAGTAACGGGCGGTGCTCACAGGTTCTGGTGTCATCGATCCTACAAAGCCAAACTGCCGCTCCGCATCATTCTCATGCTTTGCTACTGCACGGCCGGACAAAACACGCTCTACGATTGGGTTAGAGACCATCGAGTTCATCATAAATATTCGGAGACTGACGCTGATCCACATAACTCGAACCGAGGATTTTTCTTCGCCCACGTCGGCTGGCTGATGCTTCAGAAGCATCCAGAAGTTATCAAGAAAGGTCGCGCCATTGACATGAGCGATGTCTTGGCCGATCCCGTCATTCAATTCCATCAGAAGTACTTTATTCCGCTGAAGATTCTGTGCTGCTTCATTCTGCCGACAATCGTGCCGGTCTACTTCTGGGGTGAGACGTGGTACTTGGCCTTCTTGTCTCAAGCCGTTCTGCGCTACATCTTCAGCTTGAATTTCACATGGTTGGTCAACTCTGCGGCTCACATGTGGGGATACAAACCTTACGACAGAAAAATCAATCCCGTCGAGAACGTGGCAGTGGCGGTCGTTGCTATGGGCGAGGGATGGCACAACTATCATCACGTTTTCCCATGGGATTACAAAGCAGCTGAGCTCGGCGATTACAAGCTCAATATCACGACCTTCTGGATTGATCTGTTCGCTAAAATCGGCTGGGCGTACGACTTGAAGCAGCCGTCCGAGGACTTGGTGAGAAAAACGGTCGAGAAGCACGGCGACGGAAGCCATCCGGTTTACGGTCACGGGAATAACGGTGATATTGCCAACACACCAGTCGAGGCGATTCCTGCACCTGGGGAGGAAAATCTAGGCTAC
Protein: 394 (aa)
MNHVQAVTVVETTATLDESAKNVNSQTKSNVTKRNVYKDSNNNVQQITKESLNVDSSKSEDELMEYTLLGFIKFKSPIKWLNTVSIILIHLIFLFAFVTYPLHGRILTTLWGFVVGGICGFGVTGGAHRFWCHRSYKAKLPLRIILMLCYCTAGQNTLYDWVRDHRVHHKYSETDADPHNSNRGFFFAHVGWLMLQKHPEVIKKGRAIDMSDVLADPVIQFHQKYFIPLKILCCFILPTIVPVYFWGETWYLAFLSQAVLRYIFSLNFTWLVNSAAHMWGYKPYDRKINPVENVAVAVVAMGEGWHNYHHVFPWDYKAAELGDYKLNITTFWIDLFAKIGWAYDLKQPSEDLVRKTVEKHGDGSHPVYGHGNNGDIANTPVEAIPAPGEENLGY
| Type | Start | End | Length |
| CDS |
50921 |
51254 |
334 |
| CDS |
54311 |
54487 |
177 |
| CDS |
54570 |
54729 |
160 |
| CDS |
55140 |
55325 |
186 |
| CDS |
55390 |
55678 |
289 |
| CDS |
55740 |
55775 |
36 |
| intron |
51255 |
54310 |
3056 |
| intron |
54488 |
54569 |
82 |
| intron |
54730 |
55139 |
410 |
| intron |
55326 |
55389 |
64 |
| intron |
55679 |
55739 |
61 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
ADD19130 |
fatty acid desaturase [Glossina morsitans morsitans] |
1e-130 |
| InterPro |
IPR015876 |
Fatty acid desaturase, type 1, core |
|
| InterPro |
IPR005804 |
Fatty acid desaturase, type 1 |
|
| Gene Ontology(BP) |
GO:0055114 |
oxidation-reduction process |
|
| Gene Ontology(BP) |
GO:0006629 |
lipid metabolic process |
|
| Gene Ontology(MF) |
GO:0016717 |
oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water |
|
| Pfam |
PF00487.19 |
Fatty acid desaturase |
5.3e-15 |
| Pfam |
PF00517.12 |
Retroviral envelope protein |
0.087 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. humanus |
PHUM128200-PA |
| A. gambiae |
AGAP003049 |
| N. vitripennis |
NV14292-PA |
| A. gambiae |
AGAP013071 |
| C. quinquefasciatus |
CPIJ013750 |
| A. aegypti |
AAEL004573 |
| C. quinquefasciatus |
CPIJ013749 |
| T. castaneum |
TC016414 |
| D. plexippus |
DPOGS213664PA |
| B. mori |
BGIBMGA010614-TA |
| D. melanogaster |
FBgn0039754 |
| P. vanderplanki |
Pv.11765 |
| A. aegypti |
AAEL003622 |