MidgeBase gene description page [Pn.16676]
Outline
| Gene ID | Pn.16676 |
| Type | Protein coding gene |
| Scaffold | PnScaf42020 |
| Start | 848 |
| End | 4594 |
| Direction | + |
Sequence
Transcript: 816 (bp)
ATGATATTTACCGGTAATCATGGTCGGAGACGAGCACAGAATAATGGACAGAGTCAATACAGTCAGCGAAGGCGCAGCTCAAACAGTGAAGGTCGCAGCAAAAGTTCGTCGTCCTCGTCGGCGTCGTCATCGTCGCGATTGCCGTGCTCATCGAGCCACAATTCTTCTTATCTGCATTCCCACTCCTCGTCCGCATCCTCGTCGTCGTCATTGCCCAACTACTACTCGTCCCTGCTGCCCTCACGAACAAACACCGGCTCCACTTACATGACAATTCCGGAGCTGGACGAGGAGCCGAAGCACGACTTTTATCTGCAGAAAACGAGAGCGCGAGACATCACGAAGCGCCGCGGTGCCATAAAGCTCATCCAGCGATTAACCATCCACGAAGTTAATGGACACAAATTTATATCAAAATTCTTTCGACAGCCCACGTTCTGCGCCTACTGCAAGGAATTCCTTTGGGGATTTAATAAGCAAGGATATCAGTGTAAAACATGTCTAACGGCAGTACATAAACGGTGTCACGATAAATTATTAGGAACATGCTCAGAATCTAGTTTTAACTCTGAAAGTACAATTTATTTAAGGGAAAGATTCAAGATTGACTTGCCACATCGGTTTAAGGTGTACACATTTATGAGTCCGACGTTTTGTGATCATTGCGGCTCGCTGCTCTACGGATTCTTTCGGCAAGGCTTGAAATGCGAAGATGTCGCTAGTAGTCGCGCTACTCAGAGTCATCTGAAATCGACCATACATCAACAGCTCACGTCAGATGAACATTTTCGCTGCATGCAAAATATTTCATTGCTT
Protein: 272 (aa)
MIFTGNHGRRRAQNNGQSQYSQRRRSSNSEGRSKSSSSSSASSSSRLPCSSSHNSSYLHSHSSSASSSSSLPNYYSSLLPSRTNTGSTYMTIPELDEEPKHDFYLQKTRARDITKRRGAIKLIQRLTIHEVNGHKFISKFFRQPTFCAYCKEFLWGFNKQGYQCKTCLTAVHKRCHDKLLGTCSESSFNSESTIYLRERFKIDLPHRFKVYTFMSPTFCDHCGSLLYGFFRQGLKCEDVASSRATQSHLKSTIHQQLTSDEHFRCMQNISLL
| Type | Start | End | Length |
| CDS |
848 |
937 |
90 |
| CDS |
1276 |
1565 |
290 |
| CDS |
1653 |
1749 |
97 |
| CDS |
1901 |
1919 |
19 |
| CDS |
3138 |
3223 |
86 |
| CDS |
3811 |
3895 |
85 |
| CDS |
4156 |
4200 |
45 |
| CDS |
4488 |
4591 |
104 |
| intron |
938 |
1275 |
338 |
| intron |
1566 |
1652 |
87 |
| intron |
1750 |
1900 |
151 |
| intron |
1920 |
3137 |
1218 |
| intron |
3224 |
3810 |
587 |
| intron |
3896 |
4155 |
260 |
| intron |
4201 |
4487 |
287 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001869139 |
predicted protein [Culex quinquefasciatus] gb|EDS28490.1| predicted protein [Culex quinquefasciatus] |
4e-65 |
| InterPro |
IPR002219 |
Protein kinase C-like, phorbol ester/diacylglycerol binding |
|
| InterPro |
IPR020454 |
Diacylglycerol/phorbol-ester binding |
|
| Gene Ontology(BP) |
GO:0035556 |
intracellular signal transduction |
|
| Pfam |
PF00628.24 |
PHD-finger |
3.1 |
| Pfam |
PF08063.7 |
PADR1 (NUC008) domain |
4.7 |
| Pfam |
PF13831.1 |
PHD-finger |
2.1 |
| Pfam |
PF10265.4 |
Uncharacterized conserved protein (DUF2217) |
0.32 |
| Pfam |
PF00130.17 |
Phorbol esters/diacylglycerol binding domain (C1 domain) |
5.6e-22 |
| Pfam |
PF02150.11 |
RNA polymerases M/15 Kd subunit |
5 |
| Pfam |
PF07306.6 |
Protein of unknown function (DUF1455) |
0.16 |
| Pfam |
PF09726.4 |
Transmembrane protein |
1.1 |
| Pfam |
PF12773.2 |
Double zinc ribbon |
0.36 |
| Pfam |
PF14446.1 |
Prokaryotic RING finger family 1 |
0.0095 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| C. quinquefasciatus |
CPIJ019937 |
| C. quinquefasciatus |
CPIJ018495 |
| P. vanderplanki |
Pv.08163 |
| H. melpomene |
HMEL018037-PA |
| B. mori |
BGIBMGA014071-TA |