MidgeBase gene description page [Pn.16650]
Outline
| Gene ID | Pn.16650 |
| Type | Protein coding gene |
| Scaffold | PnScaf41798 |
| Start | 433 |
| End | 1023 |
| Direction | - |
Sequence
Transcript: 588 (bp)
ATGTCGTTGCGACCGGACGATCACCGCAAGAAATGGGACCGCAAGGAGTTCGAGCGCAAGGCCCTCGACCGCATCCAGAAGCTGAAGAAGGACGAGGAGCCACAGCCGCCGGAGACGCCGCGCGAGCTGCTCAAAGTGCGCGAGTACAAGGTCGACCTCGACAGCAAGCTGGGCAAGTCGATGGTCATCAGCAAGACGACGCCGAGTAGCCAGTCGGGCGGCTATTTTTGCAATGTGTGCGATTGCGTCGTGAAGGACTCGATCAACTTCCTCGACCACATCAACGGCAAGAAGCACCAGCGCAATCTCGGCATGTCGATGAAGGTCGAGCGCAGCAGCCTCGAGCAGGTGAAGGAGCGCTTCAACAAGAACAAGCGGCGGCAGGACGAGAAGACCAAGGACTTCGACCTCGAGCAGCGGCTGAAGGAGGCGCAGGAGGTCGAGGAGCGCGCGAAGGAAATGCGCCGCGAGAAGAAGAAGCGAAAGCACGAGGAGACGGCGAGCGGCTCGAGTGCCGCCGACGGCTTTGACGACGAGATGATGCGCATGATGGGCTTCGGTGGCTTCGGCGGTTCGAAGAAAAACAAC
Protein: 196 (aa)
MSLRPDDHRKKWDRKEFERKALDRIQKLKKDEEPQPPETPRELLKVREYKVDLDSKLGKSMVISKTTPSSQSGGYFCNVCDCVVKDSINFLDHINGKKHQRNLGMSMKVERSSLEQVKERFNKNKRRQDEKTKDFDLEQRLKEAQEVEERAKEMRREKKKRKHEETASGSSAADGFDDEMMRMMGFGGFGGSKKNN
| Type | Start | End | Length |
| CDS |
436 |
1023 |
588 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002074374 |
GK10568 [Drosophila willistoni] gb|EDW85360.1| GK10568 [Drosophila willistoni] |
4e-62 |
| InterPro |
IPR003604 |
Zinc finger, U1-type |
|
| InterPro |
IPR022755 |
Zinc finger, double-stranded RNA binding |
|
| Gene Ontology(MF) |
GO:0008270 |
zinc ion binding |
|
| Gene Ontology(MF) |
GO:0003676 |
nucleic acid binding |
|
| Pfam |
PF06220.7 |
U1 zinc finger |
0.00029 |
| Pfam |
PF02932.11 |
Neurotransmitter-gated ion-channel transmembrane region |
2.6 |
| Pfam |
PF13708.1 |
Methyltransferase domain |
0.041 |
| Pfam |
PF13925.1 |
con80 domain of Katanin |
0.039 |
| Pfam |
PF12301.3 |
CD99 antigen like protein 2 |
0.0064 |
| Pfam |
PF04514.7 |
Bluetongue virus non-structural protein NS2 |
7.9 |
| Pfam |
PF12874.2 |
Zinc-finger of C2H2 type |
9.3e-06 |
| Pfam |
PF08648.7 |
Protein of unknown function (DUF1777) |
0.0013 |
| Pfam |
PF12171.3 |
Zinc-finger double-stranded RNA-binding |
5.4e-06 |
| Pfam |
PF09726.4 |
Transmembrane protein |
0.18 |
| Pfam |
PF09935.4 |
Protein of unknown function (DUF2167) |
0.13 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. gambiae |
AGAP006245 |
| T. castaneum |
TC016272 |
| P. vanderplanki |
Pv.07400 |
| A. aegypti |
AAEL001945 |
| M. musculus |
ENSMUSG00000001383 |
| N. vitripennis |
NV50290-PA |
| P. humanus |
PHUM117550-PA |
| H. melpomene |
HMEL016910-PA |
| B. mori |
BGIBMGA000360-TA |
| S. invicta |
SI2.2.0_01339 |
| D. melanogaster |
FBgn0035520 |
| N. vitripennis |
NV16226-PA |
| C. quinquefasciatus |
CPIJ009914 |
| A. mellifera |
GB16932-PA |
| D. plexippus |
DPOGS215560PA |
| H. sapiens |
ENSP00000274712 |