MidgeBase gene description page [Pn.16627]
Outline
| Gene ID | Pn.16627 |
| Type | Protein coding gene |
| Scaffold | PnScaf41461 |
| Start | 7732 |
| End | 12828 |
| Direction | + |
Sequence
Transcript: 1770 (bp)
ATGGAAGTTAAGTTCATTCCGTTTCTCATTCTAATTACTCACACAAATCTAATTTACTGCGAAATTGAGGGCGCAACAAGAGCACTGAGTGATGCAATTCTGATGGCAAACATCCACGAAATCAGCTTAGTTGCCGATTTTCCGAGCGATCGTGTTGAGGCGCTGATAAAAGCTTTGAGCACCGCAAATTCTGCCAGAAGTTTGACGCTCAAAAATGCTCAGCAGCAGCGTCAGCAACAACAACTGTCAGCACTGAACGTTCTCATAACAAAGCTTGATGATTCATTTGGTGAACTTTTTTCGCAAAACTCAAGCGCTCAAGAGAAGTTTTTCCTATTGATTTTTATCGGCGAAAGTGGTGCGGAAAAACGGCAAGAGGAAAGAATGTCGAAAGTTTTCAACGAGCTGTGGAAGTTTCACATCTACAATGTCAATGTTATTACGCTTGCCGACATAAAAATGTTCACTTTCATGCCCTTCTCGACGCTCGACTGCAGAAGCGTGCATCCCATCGAGATCAACTCGTTTTATTGCAGCAATTTCTCATGGCGGAGCACGGAAATTTTTCCACAAAAATTCCGAAATCTCTTCGACTGTCCGGTGAACGTGTCGACCTTTCCGTACCCGCCGAGCACTATATTTGACACAGCCAGCGGTCAGTTGAGCGGTAACGACATCGAACTGCTCAATGGGCTCTCAAAAATGCTCAATTTTGAGCTCGCAATCGAAATGAGAATGGAGGCGGGCGCGTGGGGTCAAATCTTCGAAAACGGTACCGCGACGGGCGTCATGAAGCAGGTGATGGAGGGGCAGGCCGACCTCGCCATCGGAACCTATTATCTGACGCTTACGCGCGCGAAGTTCATGAGCTTCATTCACTACAGCAACATCGACATCATTCTGACCATCCCGCGCGCGCTGCCGCTGACGTCGATCGAGAAGCTCTTTTCGCCCTTCACCGCCGACGCGTGGATGGCCTTGATCGTGCTGCCGCTTTCGGTGGGATTTTGCGTAGTTTCGCTCATGCAGAAACTGAAGTTCGAGCGCTTGCAGCTGCAGAGCTCGCCGCACATGAACCTCCTCAATATCGTTCTGAACGGCTCGCAGCACTTTGTGCCGCGTCAAACGCCGCTGAAAATAATTCTCATTTCCTTCGTGACTTTCTGTTTGATCGTGCGGACGCTCTATCAGGCGGGCATGTTCAAGTTTCTGCAGTCGGATCAGCGACATGCCGACCTTCAGACCATCGATGAGCTGATCGAGAAGGGCTTCGATGTGTGGATGTACGAGTCGTTTCAGGAGCTCAGCAGTGGACTGAAAATTCATCAGAGACGAAAAATCGTCGGCGACAACAAGACCATCGAGTACTACCAGATGCAGACGCTCAACCCGCACTTTAAGGGAGCAGTGGTCGGACCGTCGACAGAGATTGTCTACGCAAATCAGATCAACCACAAGAACTTTACTTTCCGCGTGTTATCCGAGATCATATTCGCTCTGCCCGTCGCCATGTACCAACCGAAAAATCACTTTCTCGGGAAAGAAATCAAGCGGTGCGTGGGAGAGCTGCACTCGGCCGGCCTCATCGATTACTGGCAGAAACTCTACCTCAACGACTTCTACATGAATCTCGATGCTGGCGACAACACGCCGAAAGTTCTGTCCTTCAAGCATTTGTCGGGGATTTTTTACGTTTGGATCGGCGGCTGCTGCATGTCTTTCGTCGTGTTTTGCTTTGAACTCGGCCACAAGCGCATTCTGATCCCGAGC
Protein: 590 (aa)
MEVKFIPFLILITHTNLIYCEIEGATRALSDAILMANIHEISLVADFPSDRVEALIKALSTANSARSLTLKNAQQQRQQQQLSALNVLITKLDDSFGELFSQNSSAQEKFFLLIFIGESGAEKRQEERMSKVFNELWKFHIYNVNVITLADIKMFTFMPFSTLDCRSVHPIEINSFYCSNFSWRSTEIFPQKFRNLFDCPVNVSTFPYPPSTIFDTASGQLSGNDIELLNGLSKMLNFELAIEMRMEAGAWGQIFENGTATGVMKQVMEGQADLAIGTYYLTLTRAKFMSFIHYSNIDIILTIPRALPLTSIEKLFSPFTADAWMALIVLPLSVGFCVVSLMQKLKFERLQLQSSPHMNLLNIVLNGSQHFVPRQTPLKIILISFVTFCLIVRTLYQAGMFKFLQSDQRHADLQTIDELIEKGFDVWMYESFQELSSGLKIHQRRKIVGDNKTIEYYQMQTLNPHFKGAVVGPSTEIVYANQINHKNFTFRVLSEIIFALPVAMYQPKNHFLGKEIKRCVGELHSAGLIDYWQKLYLNDFYMNLDAGDNTPKVLSFKHLSGIFYVWIGGCCMSFVVFCFELGHKRILIPS
| Type | Start | End | Length |
| CDS |
7732 |
8179 |
448 |
| CDS |
8430 |
9312 |
883 |
| CDS |
9463 |
9895 |
433 |
| CDS |
12820 |
12825 |
6 |
| intron |
8180 |
8429 |
250 |
| intron |
9313 |
9462 |
150 |
| intron |
9896 |
12819 |
2924 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001649350 |
hypothetical protein AaeL_AAEL014687 [Aedes aegypti] gb|EAT33059.1| conserved hypothetical protein [Aedes aegypti] |
2e-46 |
| InterPro |
IPR001638 |
Extracellular solute-binding protein, family 3 |
|
| InterPro |
IPR001320 |
Ionotropic glutamate receptor |
|
| Gene Ontology(BP) |
GO:0006810 |
transport |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(CC) |
GO:0030288 |
outer membrane-bounded periplasmic space |
|
| Gene Ontology(MF) |
GO:0005234 |
extracellular-glutamate-gated ion channel activity |
|
| Gene Ontology(MF) |
GO:0004970 |
ionotropic glutamate receptor activity |
|
| Gene Ontology(MF) |
GO:0005215 |
transporter activity |
|
| Pfam |
PF00060.21 |
Ligand-gated ion channel |
9.4e-12 |
| Pfam |
PF10613.4 |
Ligated ion channel L-glutamate- and glycine-binding site |
0.013 |
| Pfam |
PF11934.3 |
Domain of unknown function (DUF3452) |
0.021 |
| Pfam |
PF02465.13 |
Flagellar hook-associated protein 2 C-terminus |
0.091 |
| Pfam |
PF00497.15 |
Bacterial extracellular solute-binding proteins, family 3 |
3.8e-07 |
| Pfam |
PF13314.1 |
Domain of unknown function (DUF4083) |
0.0087 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.10111 |