MidgeBase gene description page [Pn.16623]
Outline
| Gene ID | Pn.16623 |
| Type | Protein coding gene |
| Scaffold | PnScaf41460 |
| Start | 23 |
| End | 952 |
| Direction | + |
Sequence
Transcript: 873 (bp)
ATGTGCTTCTGGTTACTCGGCCGCTGCATCGACGCCGACTTCACTCCGCTGCTGTGCGCGGGCGCCATCTGCGGCGCGACGCTCCTCGACGCATCCGAGTGCCCGGTGGCGTGCGAGTCGCTCAAAATGTGCAGCGAGTGTCTGGCGCGCAGCGAGTGCGGCTGGTGCGCGAGCGAAGGTAACGGCGCCGGTGCCTGCACGAGCGGCAACGTCAACCACTCGTACGGACGGTGCGACAGCCACGCATGGCACTACCTCACGTGCCCCGCCGAGGACGAGTGCACGAACGGCCACCACAACTGCGACGCCATCAGCGAGCGGTGTGTCGACCTGCTCGACGGCTTCCGGTGCGTGTGCGCCGCCGGCTACCGCGACGCCACCGACGGCGCCGACACGACGCAAAAGTGCCGGCCGATCTGCGAGCAGGGCTGCGTGTTCGGCACGTGCATCCACCCGGACATCTGCCGCTGCCACTTCGGCTACGTCGGCGCCGACTGCTCCATCGCGTGCAACTGCTCCGGCCACAGCGAGTGCGCCGGCCCCGCCGCCCTCGACACGTGCCTCCGGTGCATGAACAACACGCGCGGCGACCGCTGCGAGAAGTGCGAGAAGTTCTTCGTGCGCCGCAACGGCAAGTGCGAGAGCTGCAGCAGCTTCTGCCACGGGCACACGGACGTGTGCGTGGGCGCCGACATGCGCGACTTCAACGGCACCGTCGAGGAGCTGCGCGAGCTTGTGAGCGAGGGGCCCATGGCCGAAGACGCCGTCTGTCTGAGCTGCGGCAACTTCACCAGCGAGCGGCGCTGCGACTCGTGCATCAGCGGCTTCTTCCGCGGCACATCAAACCTCAGCGAGCCGTGCCGCAAGTGCATG
Protein: 291 (aa)
MCFWLLGRCIDADFTPLLCAGAICGATLLDASECPVACESLKMCSECLARSECGWCASEGNGAGACTSGNVNHSYGRCDSHAWHYLTCPAEDECTNGHHNCDAISERCVDLLDGFRCVCAAGYRDATDGADTTQKCRPICEQGCVFGTCIHPDICRCHFGYVGADCSIACNCSGHSECAGPAALDTCLRCMNNTRGDRCEKCEKFFVRRNGKCESCSSFCHGHTDVCVGADMRDFNGTVEELRELVSEGPMAEDAVCLSCGNFTSERRCDSCISGFFRGTSNLSEPCRKCM
| Type | Start | End | Length |
| CDS |
23 |
42 |
20 |
| CDS |
97 |
949 |
853 |
| intron |
43 |
96 |
54 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001850596 |
laminin subunit gamma-3 [Culex quinquefasciatus] gb|EDS32341.1| laminin subunit gamma-3 [Culex quinquefasciatus] |
1e-73 |
| InterPro |
IPR000152 |
EGF-type aspartate/asparagine hydroxylation site |
|
| InterPro |
IPR003659 |
Plexin/semaphorin/integrin |
|
| InterPro |
IPR002049 |
EGF-like, laminin |
|
| InterPro |
IPR006210 |
Epidermal growth factor-like |
|
| InterPro |
IPR001881 |
EGF-like calcium-binding |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Gene Ontology(MF) |
GO:0005509 |
calcium ion binding |
|
| Pfam |
PF12662.2 |
Complement Clr-like EGF-like |
0.0087 |
| Pfam |
PF00053.19 |
Laminin EGF-like (Domains III and V) |
0.0074 |
| Pfam |
PF07645.10 |
Calcium-binding EGF domain |
3.3e-06 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.16025 |
| Pn.02990 |
| Pn.15908 |
Orthologous genes
| Species |
Gene ID |
| T. castaneum |
TC014698 |
| A. gambiae |
AGAP008185 |
| N. vitripennis |
NV13207-PA |
| H. sapiens |
ENSP00000334219 |
| S. invicta |
SI2.2.0_14129 |
| H. melpomene |
HMEL011650-PA |
| D. plexippus |
DPOGS215815PA |
| H. sapiens |
ENSP00000367313 |
| P. humanus |
PHUM249660-PA |
| T. castaneum |
TC014697 |
| M. musculus |
ENSMUSG00000045039 |
| H. sapiens |
ENSP00000251268 |
| A. mellifera |
GB11186-PA |
| C. quinquefasciatus |
CPIJ009058 |
| A. aegypti |
AAEL014347 |
| A. mellifera |
GB14726-PA |
| T. castaneum |
TC014696 |
| D. melanogaster |
FBgn0031981 |
| B. mori |
BGIBMGA013556-TA |
| P. vanderplanki |
Pv.08226 |