MidgeBase gene description page [Pn.16613]
Outline
| Gene ID | Pn.16613 |
| Type | Protein coding gene |
| Scaffold | PnScaf41335 |
| Start | 14440 |
| End | 15198 |
| Direction | + |
Sequence
Transcript: 603 (bp)
ATGGAGACCATTATTGGAATAAAGGGAAAGGACTTTGTGATGTTGGCTGCTGACAGCACACATCCCCACTCGATTATGGTGCTAAAAGATGATGAGAATAAAATTCACAAAATCTCCGATTCCTTGCTGATTGCTGCAACGGGCGATCAAGGAGACACCGTTCAATTTGTCGAGTACATCTCCAAAAATATTCTTCTGTATAAAATGAGAAATGGTTATGAGCTTGGACCGAAAGCTGCTGCTTATTTCACTCGCAAGAATCTAGCCGATTATTTGAGGACGCGTTATGCCTACCAAGTCTGGCTGCTTGTCGCTGGCTACGATAAGAAAGAAGGTCCGCAGCTGACTTTCATTGATTATCTCGCCAACACTCTTTCTGTGAACCATGGCGCTCACGGCTACGGAGGAATGTTTTGCGGCAGCATTTTTGACCAGTACCATCATGAGAACATTACTCAAGATGAGGCTTACGAAGTAATGAGAAAGTGCGCTCGCGAGATCCAGAAACGGTTGATCATCAGTCAACAGAAATTCCATGTCACAGTTGTTGATGCTAACGGAGTGAAACGATTGGAAGATATCACAGCTGAAAACTTGAAGAAT
Protein: 201 (aa)
METIIGIKGKDFVMLAADSTHPHSIMVLKDDENKIHKISDSLLIAATGDQGDTVQFVEYISKNILLYKMRNGYELGPKAAAYFTRKNLADYLRTRYAYQVWLLVAGYDKKEGPQLTFIDYLANTLSVNHGAHGYGGMFCGSIFDQYHHENITQDEAYEVMRKCAREIQKRLIISQQKFHVTVVDANGVKRLEDITAENLKN
| Type | Start | End | Length |
| CDS |
14440 |
14530 |
91 |
| CDS |
14619 |
14975 |
357 |
| CDS |
15041 |
15195 |
155 |
| intron |
14531 |
14618 |
88 |
| intron |
14976 |
15040 |
65 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001655145 |
proteasome subunit beta type [Aedes aegypti] gb|EAT46434.1| proteasome subunit beta type [Aedes aegypti] |
1e-78 |
| InterPro |
IPR016050 |
Proteasome, beta-type subunit, conserved site |
|
| InterPro |
IPR001353 |
Proteasome, subunit alpha/beta |
|
| InterPro |
IPR023333 |
Proteasome B-type subunit |
|
| Gene Ontology(BP) |
GO:0051603 |
proteolysis involved in cellular protein catabolic process |
|
| Gene Ontology(CC) |
GO:0005839 |
proteasome core complex |
|
| Gene Ontology(MF) |
GO:0004175 |
endopeptidase activity |
|
| Gene Ontology(MF) |
GO:0004298 |
threonine-type endopeptidase activity |
|
| Pfam |
PF00227.21 |
Proteasome subunit |
9.1e-41 |
| Pfam |
PF03861.9 |
ANTAR domain |
0.031 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| B. mori |
BGIBMGA013525-TA |
| S. invicta |
SI2.2.0_11095 |
| D. plexippus |
DPOGS202226PA |
| N. vitripennis |
NV18121-PA |
| A. gambiae |
AGAP008837 |
| P. vanderplanki |
Pv.10913 |
| A. aegypti |
AAEL002401 |
| D. plexippus |
DPOGS206666PA |
| M. musculus |
ENSMUSG00000028837 |
| H. melpomene |
HMEL011143-PA |
| P. humanus |
PHUM477830-PA |
| B. mori |
BGIBMGA013526-TA |
| C. quinquefasciatus |
CPIJ000894 |
| H. melpomene |
HMEL009182-PA |
| A. mellifera |
GB10351-PA |
| H. sapiens |
ENSP00000362334 |
| D. melanogaster |
FBgn0032596 |
| T. castaneum |
TC009049 |