MidgeBase gene description page [Pn.16576]
Outline
| Gene ID | Pn.16576 |
| Type | Protein coding gene |
| Scaffold | PnScaf40661 |
| Start | 15228 |
| End | 17643 |
| Direction | + |
Sequence
Transcript: 2256 (bp)
ATGGGGAAAGAAAAATCTTCCAGAAGCGACAAAGACCGAGACAAGGACAGATCCAGGAGATCTCGATCTAGAGAACGCGACCGAGAGGATCGTAAGAGGGACGATAGAAGGTACGATGAGGAAAGAAGCCGGCAGCGAGAGTCGAGGGAAGAAAAGTTCAAGGCGGAGGTGAAGGATGAGGAATTGGAACCAACTGAGCCTAAGAAAGAAAAGAAGGAGCCTCTGTCACTGGAGGAGTTGATTGCAAAAAAGAAGGCAGAAGAGGAACAAAAGAGCAAACCTGTCTTTATTTCGAAGGAACAGAGAGCCCTCGAAGCAATCAAACGAAGGCAAGAGCAAGTGGCTGCAATGCGAGCCGCACAAGCTGCAGTACCCAAATTCAACGATGTACCGGTTACTGAAATATTGCGCAAGGAGAAAGATCAGCAACGAACACTGGATCGCGATCGCAGAGACAGATATGACGACCATCGACGCGACAGAGACCGCTATGATGACAGACGCGATCGAGATAGAGACAGGGACAGAGATCGGGCTGGGCCTTCGTCATCGCGCGATAACCCTGAGAAATATTCCGATGAGGCGGTGACGTCCAAGGACAAGGAAAAGGAAGCTGAAGCCATTCGCGAGCGATATCTTGGCATGCTGAAGAAGAAACGCCGCGTCAGAAGACTCAACGACAGAAAGTTTGTGTTCGATTGGGATGCAAATGAAGACACGTCGAACGATTACAATCTACTGTACAAAGACCGCCACTACGTGCAGTTCTTTGGCAGAGGCAACATTGCGGGCATCGACATCAAGGAGCAGAAGAGAAAGCAGAGCAAATTCTATGGCGATCTGCTCGAGAAGCGAAGAACCGAGGCCGAAAAGGAGCAGGAGAAGGTTCGATTGAAGAAGGTCAAAAAGAAGGAAGACAAGCAGAAGTGGGACGATCGCCACTGGACCGAAAAAGAATTTGAAGAGATGACCGAGAGAGATTGGCGTATATTTCGCGAGGACTACAACATTACGATTAAGGGCGGCAAAATTCCCAATCCAATCCGAAAATGGACCGAAGCGAGCTTCTCGAAGGACATCCTGGACATTATCGAAAAGGTCGGCTACAAAGAGCCGACTCCCATTCAACGTCAGGCCATTCCTATTGGTCTGCAGAATCGAGATATTATCGGTATCGCAGAAACAGGTTCAGGAAAGACGCTGGCCTTCTTAATTCCGTTGCTCACTTGGATTCAATCACTGCCCAAGCAAGAGCGTCAAGAGAACATCGACCAAGGTCCGTATGCACTCATTCTTGCGCCGACAAGAGAACTCGCACAGCAAATCGAGGAGGAAACGAGAAAGTTCGGAACGCCGCTCGGAATCCGAACTGTTGTCGTTGTCGGTGGTTTGTCTCGCGAGGAGCAAGGTTTCCAGCTGCGGCTGGGTTGCGAAATCGTCATTTGTACGCCGGGTCGTTTGATCGACGTGCTCGAGAATCGCTATCTTGTGCTCAATCAGTGCACCTACATCGTTCTCGACGAGGCAGATCGTATGATTGACATGGGTTTCGAGCCGGACGTCCAGAAAATCCTCGAGTACATGCCCAAGTACAGGCAAACTGTCATGTTCACAGCCACTATGCCGCCGGCAGTGGAGCGACTTGCTCGCACCTACTTGCGTCGACCAGCAACGGTTTACATCGGCTCGATCGGTAAGCCGACGGAGAGAACCGAACAAATCGTTATTATGACAACCGAAACTGAAAAGAGAAAGAAATTGATGGAGCTGCTGGCACGAGGCCTCGAGCCGCCAGTAATTATTTTCGTGAACCAAAAGAAGGGCGCAGATGTGCTGGCCAAAGGTTTGGAGAAATTCGGCTTCAACGCGTGCACGTTGCACGGCGGCAAAGGACAAGAGCAGCGCGAGTATGCCCTCGCATCTCTCAAAAACGGATCGAAAGATATTTTGGTCGCAACAGATGTTGCAGGTCGTGGTATTGACATCAAAGACGTTTCAATGGTCATCAACTATGACATGGCGAAAACTATTGAGGACTACACTCACAGAATTGGTCGCACAGGTCGTGCTGGAAAGACTGGTATCGCCATCACTTTCATCACCAAGGACGACAGTTCTCTGTTCTTCGATCTCAAGCAGCTAATCATGAGCAGTCCGATTTCCACTTGCCCACCCGAGTTGATGAACCATCCTGACGCTCAACACAAGCCCGGCACCGTCGTTACAAAGAAACGACGCGAAGAGAAAATATTTGCG
Protein: 752 (aa)
MGKEKSSRSDKDRDKDRSRRSRSRERDREDRKRDDRRYDEERSRQRESREEKFKAEVKDEELEPTEPKKEKKEPLSLEELIAKKKAEEEQKSKPVFISKEQRALEAIKRRQEQVAAMRAAQAAVPKFNDVPVTEILRKEKDQQRTLDRDRRDRYDDHRRDRDRYDDRRDRDRDRDRDRAGPSSSRDNPEKYSDEAVTSKDKEKEAEAIRERYLGMLKKKRRVRRLNDRKFVFDWDANEDTSNDYNLLYKDRHYVQFFGRGNIAGIDIKEQKRKQSKFYGDLLEKRRTEAEKEQEKVRLKKVKKKEDKQKWDDRHWTEKEFEEMTERDWRIFREDYNITIKGGKIPNPIRKWTEASFSKDILDIIEKVGYKEPTPIQRQAIPIGLQNRDIIGIAETGSGKTLAFLIPLLTWIQSLPKQERQENIDQGPYALILAPTRELAQQIEEETRKFGTPLGIRTVVVVGGLSREEQGFQLRLGCEIVICTPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSIGKPTERTEQIVIMTTETEKRKKLMELLARGLEPPVIIFVNQKKGADVLAKGLEKFGFNACTLHGGKGQEQREYALASLKNGSKDILVATDVAGRGIDIKDVSMVINYDMAKTIEDYTHRIGRTGRAGKTGIAITFITKDDSSLFFDLKQLIMSSPISTCPPELMNHPDAQHKPGTVVTKKRREEKIFA
| Type | Start | End | Length |
| CDS |
15228 |
16814 |
1587 |
| CDS |
16890 |
17271 |
382 |
| CDS |
17354 |
17640 |
287 |
| intron |
16815 |
16889 |
75 |
| intron |
17272 |
17353 |
82 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EFR22532 |
hypothetical protein AND_15065 [Anopheles darlingi] |
0.0 |
| InterPro |
IPR014014 |
RNA helicase, DEAD-box type, Q motif |
|
| InterPro |
IPR011545 |
DNA/RNA helicase, DEAD/DEAH box type, N-terminal |
|
| InterPro |
IPR000629 |
RNA helicase, ATP-dependent, DEAD-box, conserved site |
|
| InterPro |
IPR014001 |
Helicase, superfamily 1/2, ATP-binding domain |
|
| InterPro |
IPR001650 |
Helicase, C-terminal |
|
| Gene Ontology(MF) |
GO:0005524 |
ATP binding |
|
| Gene Ontology(MF) |
GO:0004386 |
helicase activity |
|
| Gene Ontology(MF) |
GO:0008026 |
ATP-dependent helicase activity |
|
| Gene Ontology(MF) |
GO:0003676 |
nucleic acid binding |
|
| Pfam |
PF00270.24 |
DEAD/DEAH box helicase |
3e-50 |
| Pfam |
PF00271.26 |
Helicase conserved C-terminal domain |
3e-27 |
| Pfam |
PF04851.10 |
Type III restriction enzyme, res subunit |
0.00022 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000310723 |
| D. melanogaster |
FBgn0032690 |
| P. vanderplanki |
Pv.17525 |
| B. mori |
BGIBMGA003429-TA |
| P. humanus |
PHUM537610-PA |
| A. mellifera |
GB17773-PA |
| T. castaneum |
TC014753 |
| A. aegypti |
AAEL001657 |
| A. gambiae |
AGAP007825 |
| S. invicta |
SI2.2.0_11687 |
| D. plexippus |
DPOGS202155PA |
| C. quinquefasciatus |
CPIJ000951 |
| H. melpomene |
HMEL010879-PA |
| N. vitripennis |
NV12144-PA |
| C. quinquefasciatus |
CPIJ006204 |