MidgeBase gene description page [Pn.16545]
Outline
| Gene ID | Pn.16545 |
| Type | Protein coding gene |
| Scaffold | PnScaf40400 |
| Start | 10506 |
| End | 13040 |
| Direction | + |
Sequence
Transcript: 2223 (bp)
ATGGGAGTACCAGCATTCTTCAGATGGCTATCACGGAAGTATCCAAGCGTTATTATCGAATGCACAGAGAAAAAGAGTGTGGACGAAGAAACAGGCAGGAACATTTACGAAGATTCATCTCTTCCAAATCCAAATGATATTGAATTTGACAATCTCTATCTTGACATGAACGGTATCATACATCCTTGTACGCATCCCGAGGACAAACCACCCCCAAAAGACGAAAATGAAATGATGATAGCAATTTTTGACTGCATTGATAGACTGTTTTCAATTGTAAGACCGCGAAAATTACTCTACATGGCAATCGATGGCGTAGCACCACGCGCGAAAATGAACCAGCAGAGATCGAGACGTTTTCGAGCATCGAAGGAGTCAGCCGAGAAGGCAGCAGAAATTGCTCGCATCCGAGAGGAACTGCGTGAAAAAGGCGCCATTCTTCCCCCTGAGAAACCTAAAGAGCATCACTTCGACTCCAATTGCATTACTCCGGGAACGCCGTTCATGGAGAGGCTGAGTCGATGCTTGCAATATTACATACACGATCGACTAAACAATGATCCAGGTTGGCGTAACATCAAAGTGATATTGTCAGACGCTAATGTTCCCGGCGAGGGAGAGCACAAAATTATGGATTACATAAGAAAGCAACGAGCCCAGCCCGACCACGATCCAAACACACAGCATGTGTTATGCGGAGCTGACGCTGACTTAATCATGCTTGGCTTGGCCACACACGAGCCCAATTTTACAATCATTCGTGAAGAGTTCTTGCCGAACAAGCCCCGTCCATGCGACATTTGCTCGCAAATGGGTCACGAGATGAAGGACTGCTCCGGTCTCGACATGGAATATCACGCGCAGCCCGACATTCAATTCGGAAAAGAGACGCAGTTCATTTTCGTTCGACTGAACGTCCTGAAGGAATATCTCGCCAAGGAGCTGCAAATGCCGAATCTGCCGTTCAAGTATGACTTCGAGCGAGTGATCGATGACTGGGTTTTTATGTGCTTCTTCGTTGGAAACGATTTCTTACCTCACTTGCCGAGCTTGGAAATTCGCGAAAACGCAATCGATCGCCTCATTCATTTGTATAAAAAGTGCGTGTACAAAACCGGCGGTTATCTCACCGACTCGGGAGACGTTGCACTCGAACGCGTGGAAATGATCATGCGAGACTTGGGAGATGTCGAGGATGAAATCTTTAGAGACCGTCAGAAGAATGAGGAGCGCATGAAAGCTAGAAACAAGCGCATGAAGCTCGAACGTCAGCAAAGACCGAATTTCGAGATGATCCACAAGACTCAGTTTGCTCCGACCGCTCTCGGTCAAGGAAATGCTCCCAGCGCAGTTGTCAATGCAAAGGAGGACATTTTACGCATAAGCAAGATGGCGATGGAAATGCAAGCCGGCTCGAATGCAGCACTTGACTCGATGCTCAAACCGGTTGGCGGTCAACCGGCTTCTGATCAAAATCGCCGTGGAATTAAGCGTAAGGCTGATGACGATGAGCCCGAGAAAAAGGAAGAAGAGGACGACCAGGCACACGATGAAGTCCGTCTGTGGGAAGATGGTTTCAAGGACCGCTACTACGAGTCCAAGTTCGACGTCATGCCCGATAACGTTCAGTTCCGCTATTCGGTCGCGCTTCAATACGTCAAGGGCTTGTGCTGGGTCTTGCAGTACTACTATCAAGGCTGTGCTAGCTGGGAGTGGTATTTTCCCTTTCACTACGCTCCATTCGCATCAGATTTTGTAAATATCAAAGGACTCAGTAAGAAGTTCACGAAGGGAACTCCCTTCAAACCGCTCGAGCAGCTGATGGGCGTTTTTCCTGCAGCAAGTCGTCAGCATGTTCCGCTACCCTTTGCAAAGCTCATGCTCGACCCAAAGTCACCGATCATTGACTTTTATCCGGAAGACTTTAACATTGACTTGAATGGAAAAAAATTTGCATGGCAAGGTGTCGCGTTGTTGCCATTTGTCGACGAGAAGAGATTGTTTAAGGCAGTCGAGCCTTATCGCAAGGAGCTAACCTTGGAAGAGAAGAAGCGTAATCAACTCGGCGATGATCGCTTGTACGTTGGCATTGGCTGTCCAGACTATCAACTGTTGAAAAAATTTTCCGAGACCGAAAACGATTTGAGTACTGAATACCCAATTTCAATAGACGGAATGCAGGGTCTTGCCCTTGTTTCCGAGGAAAATGTCGCAATTGGAGGG
Protein: 741 (aa)
MGVPAFFRWLSRKYPSVIIECTEKKSVDEETGRNIYEDSSLPNPNDIEFDNLYLDMNGIIHPCTHPEDKPPPKDENEMMIAIFDCIDRLFSIVRPRKLLYMAIDGVAPRAKMNQQRSRRFRASKESAEKAAEIARIREELREKGAILPPEKPKEHHFDSNCITPGTPFMERLSRCLQYYIHDRLNNDPGWRNIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHVLCGADADLIMLGLATHEPNFTIIREEFLPNKPRPCDICSQMGHEMKDCSGLDMEYHAQPDIQFGKETQFIFVRLNVLKEYLAKELQMPNLPFKYDFERVIDDWVFMCFFVGNDFLPHLPSLEIRENAIDRLIHLYKKCVYKTGGYLTDSGDVALERVEMIMRDLGDVEDEIFRDRQKNEERMKARNKRMKLERQQRPNFEMIHKTQFAPTALGQGNAPSAVVNAKEDILRISKMAMEMQAGSNAALDSMLKPVGGQPASDQNRRGIKRKADDDEPEKKEEEDDQAHDEVRLWEDGFKDRYYESKFDVMPDNVQFRYSVALQYVKGLCWVLQYYYQGCASWEWYFPFHYAPFASDFVNIKGLSKKFTKGTPFKPLEQLMGVFPAASRQHVPLPFAKLMLDPKSPIIDFYPEDFNIDLNGKKFAWQGVALLPFVDEKRLFKAVEPYRKELTLEEKKRNQLGDDRLYVGIGCPDYQLLKKFSETENDLSTEYPISIDGMQGLALVSEENVAIGG
| Type | Start | End | Length |
| CDS |
10506 |
10580 |
75 |
| CDS |
10760 |
11176 |
417 |
| CDS |
11242 |
12712 |
1471 |
| CDS |
12778 |
13037 |
260 |
| intron |
10581 |
10759 |
179 |
| intron |
11177 |
11241 |
65 |
| intron |
12713 |
12777 |
65 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_309641 |
AGAP004090-PA [Anopheles gambiae str. PEST] gb|EAA05380.5| AGAP004090-PA [Anopheles gambiae str. PEST] |
0.0 |
| InterPro |
IPR017151 |
5'-3' exoribonuclease 2 |
|
| InterPro |
IPR004859 |
Putative 5-3 exonuclease |
|
| Gene Ontology(BP) |
GO:0006139 |
nucleobase-containing compound metabolic process |
|
| Gene Ontology(CC) |
GO:0005634 |
nucleus |
|
| Gene Ontology(CC) |
GO:0005622 |
intracellular |
|
| Gene Ontology(MF) |
GO:0004527 |
exonuclease activity |
|
| Gene Ontology(MF) |
GO:0004534 |
5'-3' exoribonuclease activity |
|
| Gene Ontology(MF) |
GO:0003676 |
nucleic acid binding |
|
| Pfam |
PF03159.13 |
XRN 5'-3' exonuclease N-terminus |
1.3e-113 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| M. musculus |
ENSMUSG00000027433 |
| S. invicta |
SI2.2.0_00544 |
| C. quinquefasciatus |
CPIJ014588 |
| H. sapiens |
ENSP00000413548 |
| D. melanogaster |
FBgn0031868 |
| A. mellifera |
GB17901-PA |
| N. vitripennis |
NV18393-PA |
| D. plexippus |
DPOGS212864PA |
| T. castaneum |
TC009846 |
| A. aegypti |
AAEL003800 |
| H. sapiens |
ENSP00000366396 |
| B. mori |
BGIBMGA000809-TA |
| A. gambiae |
AGAP004090 |
| H. melpomene |
HMEL008188-PA |
| H. sapiens |
ENSP00000441113 |
| P. vanderplanki |
Pv.13037 |
| P. humanus |
PHUM256920-PA |
| B. mori |
BGIBMGA000808-TA |