MidgeBase gene description page [Pn.16428]
Outline
| Gene ID | Pn.16428 |
| Type | Protein coding gene |
| Scaffold | PnScaf38446 |
| Start | 8749 |
| End | 10729 |
| Direction | - |
Sequence
Transcript: 1137 (bp)
ATGGTGATGGTTTTCACAGAAAATGCAAAAAGATTATTTGCCTTTGGTCGCGTCAAAAAATTTCATTTTTTCGACACAATGCCGCGATCACGAAGTCGCTCCAGAGACAGAAGACGCCGGGACAAAAATGAGAGAACTAGATCAGTATCTCGTGATAAAAAAGATTATAGTCGCAAGCGCTCTCGTTCACGTTCTCACGAGAGGAGAGATAACAGAGATAGAGACCGAGATAGACGTCGTCGAGACCGATCGAGATCGCGCGACAGAAGAGATCGCCAACGGTCAAGATCACATGAGCGAAGCAATAGAGACAAGCACAGAGAAAAACATTCGAAGGAAAGAAGTTCAGAGCGCAAACATTCACAAAATAGCACCGCAGTCAGTTCAAATTCGGTGAAGCCGATTGTCATTATCGCCAGTACACATTCGAAAGGCTCTAGTAGACAAAAGCCATCAAATGCCAATTCTACTAACGCTCACAGTTCATTAGATAAAAAATCACATCAGGATCATCGAGACATGTTTGAAATATCAAATGAGTTTTCTCGCGAGGGCTTTGAACAATTCAGCAGAGATCATGGAATTGATTTCTCAAACATAGAAACTGACGAAGACCGTGAGGCTGTTCATGAAAAAATGCAAGAGCTGCTAAAAGCACATTTTGCCGCACAAGGAATCGTGTACCCTCCGCCGCCAAAGGAGGAGAAACCAACGATTAATCTAGCCACTGGATTTGCAAACGACGGATCCTTCTTAGAGCAGTTCAAGAGAATGCAAGAGGAACAGAAGCAGCAGGAGCAGATCGAAAAGAAACGTCAAGCCGAGAGTCTCATGAATCTTCCGGTGCATAGACGACGCGGAGGGAAAATTTTAAAGACAGGCGTGGTCAGCAAAAGCGAGATGGCTCCAAAGGAAATTGAACTCAAAACTGTTCCATTCGACCCACGTTTCCCAAACACAAATCAGACCCTCTACTGCTATCAGAGCTACATCGATTTCCACCGCTGCGAGAAGGTCAAGGGACAAGGATCAGAAGTGTGCGCTTATTTCAAACGTTGCTACGAAGCTATGTGTCCAAACGCTTGGGTTGAGAAATGGGACACTCAGCGCGAACAGGGCAATTTCGCTGGACGCATC
Protein: 379 (aa)
MVMVFTENAKRLFAFGRVKKFHFFDTMPRSRSRSRDRRRRDKNERTRSVSRDKKDYSRKRSRSRSHERRDNRDRDRDRRRRDRSRSRDRRDRQRSRSHERSNRDKHREKHSKERSSERKHSQNSTAVSSNSVKPIVIIASTHSKGSSRQKPSNANSTNAHSSLDKKSHQDHRDMFEISNEFSREGFEQFSRDHGIDFSNIETDEDREAVHEKMQELLKAHFAAQGIVYPPPPKEEKPTINLATGFANDGSFLEQFKRMQEEQKQQEQIEKKRQAESLMNLPVHRRRGGKILKTGVVSKSEMAPKEIELKTVPFDPRFPNTNQTLYCYQSYIDFHRCEKVKGQGSEVCAYFKRCYEAMCPNAWVEKWDTQREQGNFAGRI
| Type | Start | End | Length |
| CDS |
8752 |
9003 |
252 |
| CDS |
9352 |
10177 |
826 |
| CDS |
10671 |
10729 |
59 |
| intron |
9004 |
9351 |
348 |
| intron |
10178 |
10670 |
493 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
ACZ28278 |
cytochrome c oxidase subunit VIb [Simulium nigrimanum] |
8e-32 |
| InterPro |
IPR003213 |
Cytochrome c oxidase, subunit VIb |
|
| Gene Ontology(CC) |
GO:0005739 |
mitochondrion |
|
| Gene Ontology(MF) |
GO:0004129 |
cytochrome-c oxidase activity |
|
| Pfam |
PF02297.12 |
Cytochrome oxidase c subunit VIb |
2.7e-17 |
| Pfam |
PF10243.4 |
Microtubule-binding protein MIP-T3 |
1.2 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. gambiae |
AGAP013092 |
| H. sapiens |
ENSP00000467959 |
| H. sapiens |
ENSP00000376037 |
| H. sapiens |
ENSP00000466818 |
| H. sapiens |
ENSP00000467266 |
| T. castaneum |
TC003304 |
| C. quinquefasciatus |
CPIJ012224 |
| P. vanderplanki |
Pv.14325 |
| H. sapiens |
ENSP00000246554 |
| P. vanderplanki |
Pv.14690 |
| H. sapiens |
ENSP00000468759 |
| A. mellifera |
GB18028-PA |
| S. invicta |
SI2.2.0_05788 |
| D. plexippus |
DPOGS212340PA |
| A. aegypti |
AAEL008887 |
| B. mori |
BGIBMGA004650-TA |
| D. plexippus |
DPOGS212377PA |
| H. melpomene |
HMEL005666-PA |
| H. sapiens |
ENSP00000467128 |
| D. melanogaster |
FBgn0031066 |
| M. musculus |
ENSMUSG00000036751 |
| P. humanus |
PHUM294200-PA |
| M. musculus |
ENSMUSG00000051811 |
| C. quinquefasciatus |
CPIJ012223 |
| N. vitripennis |
NV13905-PA |
| H. sapiens |
ENSP00000465651 |
| H. sapiens |
ENSP00000320672 |
| A. aegypti |
AAEL008880 |