MidgeBase gene description page [Pn.16419]
Outline
| Gene ID | Pn.16419 |
| Type | Protein coding gene |
| Scaffold | PnScaf38421 |
| Start | 522 |
| End | 4162 |
| Direction | - |
Sequence
Transcript: 1536 (bp)
ATGAAGCCCATATTCGTTATCTACGAAAATGCTACAGATAATGATTTGGAGATAATATTTGAAAAGTTATGGAGGATTTTTCCGTTTAATGTCAACATCATTGCGACATCTTTGATAAACGAAACAAATATAATTTCACTATATGCATTTATTCCATTTCTAAATGATTCTTCGTGTAATAAAGTAAAGTCAATGAAAATCAACGACTATAATGAAAAATCAAGGAAATGGCAGTCTACAGTCTTCTTCTCCAAAAAAATTAAGGATCTCCACGGTTGTCCTTTGAGGGTTGGAAGCTTTGAAAACCAACCAGGATTTTTCGCTACAACCGTTGGGAATGAGAAGTTGTTTAAGGGAGTCGATGCCGAATTGATGGAATTATTCGGTAGCGTTCTGAATTTTAAGCCTATTTACAAGGTCTTTCCTCGGAACACTGGTTCAATCGTTAAGAATGGAACAGCGATAGTGGCAACGGGTCTTTTAAAAGGAGCTTTCGAAAAGGAGGTCGACGTAGTTATTGGTTCACTTTCTTTGCAGCAAGCAAGGGCCGAGTATTTAAGTGAAACTCATATGATTTATACAGACAAAATGATTCTGGTTATTCCGCCACCATTTCTAATGAGTTCCTTGAAGAAAATGATGCTACCTTTCAGCACTAACACGTGGATTTCTGTGATTGTTTTTGTCGCCATCATTTGTACTGTACTCTCTGCTCTAAAATTTATGCCACACACTTACCATAACTACGTGATTGGAGTAAATGTAAAAAGGAGTTTTCTAAATGTGTGGAATTTACTTCTCGGAGGCTCACAGAAGAAACTTCCTAAATCAAATTTTCCCAGATTTTTGCTCGTTAAGTTTCTGGTGTTTGCTTTAGTCATCAGAAGCTTGTACCAGGGTGCTATTTTTGATATTTTAAAAAATGATATAAGTACTGTGGAATTAACATCAATTGACGAGTTCATAGAAAACAAGTTTATATTTTACGTCTATGATTCTCTTGCTGCGCGTTTAAATGGAACTAAATATTTGGAGAGACACAAAGTAGTGAATTTATCTCAAATCAGTGTGATCGAGATGGCGACGCTCGATCCATCCTTCAAAGGGGTGGTCTTTGATTATCTGACAATCGCCCTTTACAACAATTTCCTCAGCAGCAATAATTACACATTTAAAATTTGCAAAGAGTCTCTGCTCACAAACCAAATAGTATTCTACTTTTCAAGGAACTTCTTTTTGGTGGATAGCTTCAACGTTCTGATTGAGGAGTTTAAGGAAGCTGGTTTGGTTGATCATATTTTGTCGAAATACGTTGACATGAAATTAATGAACTTACACCCAACAAAATCTCATCCCACTGCTCTCAGCTATCAAAATTTAAATGGAGCATTTCAATTACTAGAGTATGGCTTAGGACTAGCTGTGATAGCTTTTAGTATGGAATTTTTTTGCGGAACTGTTGCGAAGAAAATCAGAGACGAAGAAGAAAAAAATAGTAAAATTGGGCTCATGCTCAAAACTTTGAGCACAAAGAAA
Protein: 512 (aa)
MKPIFVIYENATDNDLEIIFEKLWRIFPFNVNIIATSLINETNIISLYAFIPFLNDSSCNKVKSMKINDYNEKSRKWQSTVFFSKKIKDLHGCPLRVGSFENQPGFFATTVGNEKLFKGVDAELMELFGSVLNFKPIYKVFPRNTGSIVKNGTAIVATGLLKGAFEKEVDVVIGSLSLQQARAEYLSETHMIYTDKMILVIPPPFLMSSLKKMMLPFSTNTWISVIVFVAIICTVLSALKFMPHTYHNYVIGVNVKRSFLNVWNLLLGGSQKKLPKSNFPRFLLVKFLVFALVIRSLYQGAIFDILKNDISTVELTSIDEFIENKFIFYVYDSLAARLNGTKYLERHKVVNLSQISVIEMATLDPSFKGVVFDYLTIALYNNFLSSNNYTFKICKESLLTNQIVFYFSRNFFLVDSFNVLIEEFKEAGLVDHILSKYVDMKLMNLHPTKSHPTALSYQNLNGAFQLLEYGLGLAVIAFSMEFFCGTVAKKIRDEEEKNSKIGLMLKTLSTKK
| Type | Start | End | Length |
| CDS |
525 |
1023 |
499 |
| CDS |
1086 |
2106 |
1021 |
| CDS |
4147 |
4162 |
16 |
| intron |
1024 |
1085 |
62 |
| intron |
2107 |
4146 |
2040 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001656710 |
hypothetical protein AaeL_AAEL003335 [Aedes aegypti] gb|EAT45392.1| conserved hypothetical protein [Aedes aegypti] |
1e-43 |
| InterPro |
IPR001320 |
Ionotropic glutamate receptor |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(MF) |
GO:0005234 |
extracellular-glutamate-gated ion channel activity |
|
| Gene Ontology(MF) |
GO:0004970 |
ionotropic glutamate receptor activity |
|
| Pfam |
PF00060.21 |
Ligand-gated ion channel |
3.1e-11 |
| Pfam |
PF00497.15 |
Bacterial extracellular solute-binding proteins, family 3 |
0.00035 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.00533 |