MidgeBase gene description page [Pn.16391]
Outline
| Gene ID | Pn.16391 |
| Type | Protein coding gene |
| Scaffold | PnScaf38049 |
| Start | 33378 |
| End | 33749 |
| Direction | - |
Sequence
Transcript: 369 (bp)
ATGAAGACAAAAGTATCATCGCGCTCTTCGAAGGCTGGATTGACTTTCCCTGTTGGTCGCATTCATCGTTTTCTCCGCAAAGGTAACTATGCGGAACGCGTTGGCGCGGGTGCTCCAGTGTACTTAGCTGCGGTTTTGGAGTACTTGACTGCTGAAGTTTTAGAGCTTGCTGGAAATGCCGCTCGTGACAACAAAAAAACACGAGTCTTACCCCGTCACCTGCAACTCGCCATCCGCAACGATGAAGAATTAAACAAGCTCCTCAGTGGCGTAACAATTTCGCAAGGAGGAGTTTTGCCCAACATCCATTCAATTCTCTTGCCTAAGAAAACCACAAAATCTTCGAAGGCAACACAAGAATATGCAGAT
Protein: 123 (aa)
MKTKVSSRSSKAGLTFPVGRIHRFLRKGNYAERVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKTRVLPRHLQLAIRNDEELNKLLSGVTISQGGVLPNIHSILLPKKTTKSSKATQEYAD
| Type | Start | End | Length |
| CDS |
33381 |
33749 |
369 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002589856 |
hypothetical protein BRAFLDRAFT_129443 [Branchiostoma floridae] gb|EEN45867.1| hypothetical protein BRAFLDRAFT_129443 [Branchiostoma floridae] |
1e-52 |
| InterPro |
IPR002119 |
Histone H2A |
|
| InterPro |
IPR009072 |
Histone-fold |
|
| InterPro |
IPR007125 |
Histone core |
|
| Gene Ontology(BP) |
GO:0006334 |
nucleosome assembly |
|
| Gene Ontology(CC) |
GO:0005634 |
nucleus |
|
| Gene Ontology(CC) |
GO:0000786 |
nucleosome |
|
| Gene Ontology(MF) |
GO:0003677 |
DNA binding |
|
| Pfam |
PF00125.19 |
Core histone H2A/H2B/H3/H4 |
1e-25 |
| Pfam |
PF00808.18 |
Histone-like transcription factor (CBF/NF-Y) and archaeal histone |
0.00025 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000364310 |
| P. vanderplanki |
Pv.07268 |
| H. sapiens |
ENSP00000434024 |
| S. invicta |
SI2.2.0_11295 |
| P. vanderplanki |
Pv.07267 |
| T. castaneum |
TC002583 |
| P. humanus |
PHUM504030-PA |
| C. quinquefasciatus |
CPIJ005867 |
| M. musculus |
ENSMUSG00000049932 |
| C. quinquefasciatus |
CPIJ020277 |