MidgeBase gene description page [Pn.16332]
Outline
| Gene ID | Pn.16332 |
| Type | Protein coding gene |
| Scaffold | PnScaf37503 |
| Start | 15414 |
| End | 16147 |
| Direction | + |
Sequence
Transcript: 642 (bp)
ATGGCAGACCAAGATATTCCAACATTCAAGTGTGTTTTGGTTGGTGATGGCGGTACTGGCAAAACTACATTCGTAAAACGCCACATGACTGGTGAATTCGAGAAGAAATATGTAGCAACGCTTGGAGTCGAAGTTCATCCGCTCGTGTTCCACACAAACCGTGGTGCGATTCGGTTTAACGTTTGGGATACAGCTGGCCAAGAAAAGTTCGGTGGATTGCGTGACGGCTACTACATTCAAGGACAGTGCGCAATTGTCATGTTTGATGTCACCTCTCGAATCACCTACAAGAATGTACCAAACTGGCATCGTGATTTGGTTCGCGTCTGCGAAAACATACCAATTGTACTGTGCGGAAACAAAGTCGATATTAAGGATCGCAAAGTGAAAGCAAAGAGCATAGTATTCCATCGAAAGAAGAACTTGCAATACTACGACATTTCAGCCAAGTCAAATTACAACTTTGAGAAGCCATTTTTGTGGCTCGCCCGCAAACTCGTCGGAGATCCCAACTTGGAGTTTGTCGCCATGCCAGCTCTTTTGCCGCCAGAAGTCAAGATGGACAAGGCATGGCAAGATCAGTTGGAGCGCGAAATGGAGGAGGCATCAAAGACTGCTCTGCCCGAGGACGACGAGGACTTG
Protein: 214 (aa)
MADQDIPTFKCVLVGDGGTGKTTFVKRHMTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIVMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGDPNLEFVAMPALLPPEVKMDKAWQDQLEREMEEASKTALPEDDEDL
| Type | Start | End | Length |
| CDS |
15414 |
15606 |
193 |
| CDS |
15696 |
16144 |
449 |
| intron |
15607 |
15695 |
89 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
CAE55862 |
GTP-binding nuclear protein RAN1 [Chironomus tentans] |
1e-122 |
| InterPro |
IPR002041 |
Ran GTPase |
|
| InterPro |
IPR005225 |
Small GTP-binding protein domain |
|
| InterPro |
IPR001806 |
Small GTPase superfamily |
|
| InterPro |
IPR003579 |
Small GTPase superfamily, Rab type |
|
| InterPro |
IPR020849 |
Small GTPase superfamily, Ras type |
|
| InterPro |
IPR003578 |
Small GTPase superfamily, Rho type |
|
| Gene Ontology(BP) |
GO:0006886 |
intracellular protein transport |
|
| Gene Ontology(BP) |
GO:0007165 |
signal transduction |
|
| Gene Ontology(BP) |
GO:0006913 |
nucleocytoplasmic transport |
|
| Gene Ontology(BP) |
GO:0007264 |
small GTPase mediated signal transduction |
|
| Gene Ontology(BP) |
GO:0006184 |
GTP catabolic process |
|
| Gene Ontology(BP) |
GO:0015031 |
protein transport |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(CC) |
GO:0005622 |
intracellular |
|
| Gene Ontology(MF) |
GO:0005525 |
GTP binding |
|
| Gene Ontology(MF) |
GO:0003924 |
GTPase activity |
|
| Pfam |
PF00025.16 |
ADP-ribosylation factor family |
3.6e-11 |
| Pfam |
PF13671.1 |
AAA domain |
0.077 |
| Pfam |
PF01926.18 |
50S ribosome-binding GTPase |
0.038 |
| Pfam |
PF09439.5 |
Signal recognition particle receptor beta subunit |
0.039 |
| Pfam |
PF08477.8 |
Miro-like protein |
5.2e-17 |
| Pfam |
PF04670.7 |
Gtr1/RagA G protein conserved region |
0.0031 |
| Pfam |
PF00503.15 |
G-protein alpha subunit |
0.063 |
| Pfam |
PF00910.17 |
RNA helicase |
0.00034 |
| Pfam |
PF00009.22 |
Elongation factor Tu GTP binding domain |
0.0051 |
| Pfam |
PF00071.17 |
Ras family |
2.8e-49 |
| Pfam |
PF13401.1 |
AAA domain |
0.071 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| D. melanogaster |
FBgn0020255 |
| B. mori |
BGIBMGA006751-TA |
| C. quinquefasciatus |
CPIJ008595 |
| A. aegypti |
AAEL009287 |
| M. musculus |
ENSMUSG00000029430 |
| H. sapiens |
ENSP00000446215 |
| H. sapiens |
ENSP00000376176 |
| P. humanus |
PHUM095420-PA |
| T. castaneum |
TC012793 |
| H. melpomene |
HMEL007729-PA |
| N. vitripennis |
NV14356-PA |
| A. mellifera |
GB13869-PA |
| A. gambiae |
AGAP007699 |
| S. invicta |
SI2.2.0_05802 |
| D. plexippus |
DPOGS212140PA |
| P. vanderplanki |
Pv.05012 |