MidgeBase gene description page [Pn.16299]
Outline
| Gene ID | Pn.16299 |
| Type | Protein coding gene |
| Scaffold | PnScaf37264 |
| Start | 735 |
| End | 2202 |
| Direction | + |
Sequence
Transcript: 1074 (bp)
ATGCTGATTCAAAATGTTAAAATTATTAAAATTTCAAATCGCACCATTTTGCTGCTGACTATTGCTTCAATTACTTTGTTATATTTCTTCTATCTCTTCAACTCGTGCATAATAAGCAGCTTTCACAAGGCATTTCGGAGGAGTGCCTCGAGGAACAACATTATCAACACCACAGCGACAACAAATTCTGATGAGACGCAGATAATTTTTGGAAGTGTCGTGAGGATTTTGTCGCTGACCGACGATGACAACAAAAACGAAAGTGCATTTAAGTATCGACTTGTTAATACACAAAATCTGTCCGTTCGAAGACTCCCCGACGTTCTCATCATTGGCGTGAAGAAGGCGGGAACGCGGGCTTTGCTCGAATTTATTCGCTTGCATCCAGATGTGAGAGCAGCTGGCAATGAGATTCACTTTTTCGACAGACACTACTCCTTCGGCCTCAACTGGTACCGAAAGAAAATGCCGCCAACAATGTCGGGGCAGCTGACAATGGAGAAGACGCCGTCGTATTTTGTTACAGCCGGCGCTCCCGCGAGAGTCTTCAAAATGAATCCCAAAATTAAGCTGCTGTTAGTGGTAAGGAACCCGGTGACGAGGGCCATAAGTGACTACGCTCAGGCGTTCAGCAAGAAGAAGGACATGAAGAAGTTCGAGGAGCTGTCGTTTGTGAATGGCTCCTACGAGCTGGTCGACACGAGTTATGGTGCAATTAAGATAGGTGTTTACGCGAAACACCTCGAACGATGGCTCAAGTATTTTCCGCTCAATCAATTTCTCTTCATCAGCGGCGAGCGGCTGATCAGCGACCCGGCGGCCGAGCTCTATCGCGTCCAGGACTTTCTCAATCTCAAGCGTGTGATAACCGAGAAGCACTTCTACTTCAACTCGACGAAGGGATTTCCGTGCTTGCTCAAGTCGGAGAGCAAGGCAACGCCGCACTGCTTGGGCAAGACGAAGGGACGAATTCATCCGGTCATCGACGAGAAGGCCATCGAGCGACTGAACGAATTTTACCGACCTTTTAACCAGAAGTTTTATCAAATGACTCTAATCAATTTCGGATGGTCG
Protein: 358 (aa)
MLIQNVKIIKISNRTILLLTIASITLLYFFYLFNSCIISSFHKAFRRSASRNNIINTTATTNSDETQIIFGSVVRILSLTDDDNKNESAFKYRLVNTQNLSVRRLPDVLIIGVKKAGTRALLEFIRLHPDVRAAGNEIHFFDRHYSFGLNWYRKKMPPTMSGQLTMEKTPSYFVTAGAPARVFKMNPKIKLLLVVRNPVTRAISDYAQAFSKKKDMKKFEELSFVNGSYELVDTSYGAIKIGVYAKHLERWLKYFPLNQFLFISGERLISDPAAELYRVQDFLNLKRVITEKHFYFNSTKGFPCLLKSESKATPHCLGKTKGRIHPVIDEKAIERLNEFYRPFNQKFYQMTLINFGWS
| Type | Start | End | Length |
| CDS |
735 |
875 |
141 |
| CDS |
939 |
1188 |
250 |
| CDS |
1437 |
1614 |
178 |
| CDS |
1695 |
2199 |
505 |
| intron |
876 |
938 |
63 |
| intron |
1189 |
1436 |
248 |
| intron |
1615 |
1694 |
80 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001850137 |
heparan sulfate glucosamine 3-O-sulfotransferase 3B1 [Culex quinquefasciatus] gb|EDS31484.1| heparan sulfate glucosamine 3-O-sulfotransferase 3B1 [Culex quinquefasciatus] |
1e-131 |
| InterPro |
IPR000863 |
Sulfotransferase domain |
|
| Gene Ontology(MF) |
GO:0008146 |
sulfotransferase activity |
|
| Pfam |
PF13469.1 |
Sulfotransferase family |
0.075 |
| Pfam |
PF00685.22 |
Sulfotransferase domain |
5.9e-43 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| B. mori |
BGIBMGA007104-TA |
| M. musculus |
ENSMUSG00000047759 |
| P. humanus |
PHUM219180-PA |
| A. aegypti |
AAEL009777 |
| A. mellifera |
GB15559-PA |
| M. musculus |
ENSMUSG00000078591 |
| H. sapiens |
ENSP00000436078 |
| M. musculus |
ENSMUSG00000070407 |
| H. sapiens |
ENSP00000354213 |
| P. vanderplanki |
Pv.06467 |
| N. vitripennis |
NV13924-PA |
| D. plexippus |
DPOGS210791PA |
| H. sapiens |
ENSP00000330606 |
| T. castaneum |
TC005759 |
| H. melpomene |
HMEL002440-PA |
| D. melanogaster |
FBgn0031005 |
| H. sapiens |
ENSP00000284110 |
| H. sapiens |
ENSP00000462696 |
| C. quinquefasciatus |
CPIJ008491 |
| A. aegypti |
AAEL013186 |
| S. invicta |
SI2.2.0_05013 |
| A. gambiae |
AGAP000422 |