MidgeBase gene description page [Pn.16282]
Outline
| Gene ID | Pn.16282 |
| Type | Protein coding gene |
| Scaffold | PnScaf37122 |
| Start | 10485 |
| End | 17856 |
| Direction | - |
Sequence
Transcript: 690 (bp)
ATGGCGCAGATAACGGCCAACCAATCGGATCCGAACGGCAACCACGACTCGGGCTATGCACCGTCGAACGTCGAAGATCTGCTAGCCGTCAATCCGTCGTCACCGCCCGGCAGTCCGCACCATCAGGCGACGATTTTCGTCAACCGCAGCGTCCACTACAACAAGGCCACCAAAAACGGCTCGACCTCATCCAACAGCAAGCACCAGATGCCGAACGCCTCGCCCAGGAAGGAGCCGACCTTTAGTGTTGCACTGAAACAATTATCAATGGTACGTTCAGGCGTACAGCAAGCACTCTCATTATCACGCAATGACTCCACAATGTCGGCTAATTCACGCGAAAGCTCACGAAAAGATAATAAAAATACGCAAGCATCGAGGTTCACAATTTACAAAGTAAATAAAGCATCAAAGAAGAAAAGAGAAAAATCGTCAGCGAAAAAGGAGCGGAAAGCAACGAAAACTCTCGCAATTGTATTAGGTGTCTTTCTGATATGCTGGGTGCCATTCTTTACGTGCAACATCATGGACGCGATGTGCACGAAGCTAAATTACGACTGCCAGCCGGGCGTGACGGCTTTCATCCTCACGACGTGGCTAGGATACATGAACAGCTTCGTCAATCCCGTCATCTACACGATCTTCAATCCCGAGTTTCGGAAGGCGTTCAAGCGGATCATGCACATTGGA
Protein: 230 (aa)
MAQITANQSDPNGNHDSGYAPSNVEDLLAVNPSSPPGSPHHQATIFVNRSVHYNKATKNGSTSSNSKHQMPNASPRKEPTFSVALKQLSMVRSGVQQALSLSRNDSTMSANSRESSRKDNKNTQASRFTIYKVNKASKKKREKSSAKKERKATKTLAIVLGVFLICWVPFFTCNIMDAMCTKLNYDCQPGVTAFILTTWLGYMNSFVNPVIYTIFNPEFRKAFKRIMHIG
| Type | Start | End | Length |
| CDS |
10488 |
10575 |
88 |
| CDS |
10649 |
10769 |
121 |
| CDS |
13252 |
13352 |
101 |
| CDS |
17419 |
17553 |
135 |
| CDS |
17612 |
17856 |
245 |
| intron |
10576 |
10648 |
73 |
| intron |
10770 |
13251 |
2482 |
| intron |
13353 |
17418 |
4066 |
| intron |
17554 |
17611 |
58 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_003436821 |
AGAP004453-PB [Anopheles gambiae str. PEST] gb|EGK97178.1| AGAP004453-PB [Anopheles gambiae str. PEST] |
2e-87 |
| InterPro |
IPR017452 |
GPCR, rhodopsin-like superfamily |
|
| InterPro |
IPR000276 |
GPCR, rhodopsin-like, 7TM |
|
| Gene Ontology(BP) |
GO:0007186 |
G-protein coupled receptor signaling pathway |
|
| Gene Ontology(CC) |
GO:0016021 |
integral to membrane |
|
| Pfam |
PF10320.4 |
Serpentine type 7TM GPCR chemoreceptor Srsx |
7.1e-06 |
| Pfam |
PF05296.8 |
Mammalian taste receptor protein (TAS2R) |
0.067 |
| Pfam |
PF10328.4 |
Serpentine type 7TM GPCR chemoreceptor Srx |
0.013 |
| Pfam |
PF11800.3 |
Replication protein C C-terminal region |
0.08 |
| Pfam |
PF10324.4 |
Serpentine type 7TM GPCR chemoreceptor Srw |
0.0099 |
| Pfam |
PF00001.16 |
7 transmembrane receptor (rhodopsin family) |
3.9e-22 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000441068 |
| D. plexippus |
DPOGS205883PA |
| D. melanogaster |
FBgn0053517 |
| C. quinquefasciatus |
CPIJ015294 |
| T. castaneum |
TC007490 |
| A. aegypti |
AAEL017166 |
| M. musculus |
ENSMUSG00000032259 |
| B. mori |
BGIBMGA008272-TA |
| S. invicta |
SI2.2.0_04437 |
| A. mellifera |
GB14561-PA |
| H. sapiens |
ENSP00000278597 |
| H. melpomene |
HMEL017818-PA |
| H. sapiens |
ENSP00000347474 |
| P. vanderplanki |
Pv.08583 |
| P. humanus |
PHUM286710-PA |
| H. sapiens |
ENSP00000442172 |
| H. sapiens |
ENSP00000438215 |
| N. vitripennis |
NV18444-PA |
| A. aegypti |
AAEL014373 |
| D. plexippus |
DPOGS208004PA |
| B. mori |
BGIBMGA008273-TA |
| A. gambiae |
AGAP004453 |
| H. sapiens |
ENSP00000354859 |