MidgeBase gene description page [Pn.16279]
Outline
| Gene ID | Pn.16279 |
| Type | Protein coding gene |
| Scaffold | PnScaf37036 |
| Start | 800 |
| End | 2113 |
| Direction | + |
Sequence
Transcript: 1206 (bp)
ATGATCACAAAAGTCGCAATTTTCACAGTTTTGACTCTGTCCTCGTCAAGAGCCACCCAGGACCTGGCGATTCGTCAGCTCAACCACTTCGGCTACTCAGGCGAAGCTCACGCGATCACGACCGATGACGGCTACATTCTCACAGTCCACCGAATCACGCCGGCTCCACACACGAACGCCTCGAAGGTTTGCCTGCTGATTCACGGCATTTGCAGCACGTCGGCCGAGTTCCTCCTCACCAAGCGAACGTCGCTGGCGCTTTTCCTTCACGACAGCGGATACGACGTGTTTTTGGGCAACACGCGCGGCGGCAGCTACTCGCAACGGCACGCAAAGCTCCACTCAAACGACAGCCGATTTTGGGATTTTTCTCTGCACGAAATGGCCAACCACGACCTGCCCGCCATCATTGACTTCGTTTTGGACGCGACGGGCGAAGAGCAGCTCGCCTACGTTGGCCACTCGCAGGGCGCAACACTGCCACTCATCCTGCTTGCAACTCAGCCGAATTACAACAACAAAATACGCCAGCTCCACCTGTCGGCACCGGCACCGTTCATGGCGAATTTTCCGAATCCTTTTCTCAGAAAGTTCGGCACGAAAATGGTCAAAATCTACTCGCACGAAAATGTGTTCAACCTCACGCCAATCGCGGATTTTCTGCAGAGGAATCTCAACAAAAACTGCCGACTCAGGCAGCCTTTCTACTTCGTGATTTGCGTGTTTTTTGAGTTTCTGCTGCTGGGCGACAACTTTACGAAACTCGAGGCCGACTACGAGATTTACCCGACATTTCTGACCTTGTTTTCGCCGGTGGTGAGCAAGCAGCAGGGACTGCACTTCTTTCAGTTCATCGACAGCGGGAAATTCCGGAGATTCGACTACGGACGGCGCGAAAATTTGAAACGTTACGGCAGCGCAGAGCCGCCGGCTTATGACCTGAAGCTGGTGACGGCACCGACCTTCATTTACTGTGCCGAGAGAGATGGCGTCGTGTCGAAACGAGACCTTGAGCATCTTCGAGAAGTCCTACCTAACGTGGTGCGCTTCAAGCTGCTCAAGAACTACAACCACCTCGACTTTGACGTCGGCCTAAACGCAAGAGAGGAAGTGCACACCGACCTCTTGCGCTGGATGAACCGAGAGACAAAGAGCTGGAATCAAATAACGCAAAGATCAAGCAATTTGAGCAGAAGCATCGGAAAT
Protein: 402 (aa)
MITKVAIFTVLTLSSSRATQDLAIRQLNHFGYSGEAHAITTDDGYILTVHRITPAPHTNASKVCLLIHGICSTSAEFLLTKRTSLALFLHDSGYDVFLGNTRGGSYSQRHAKLHSNDSRFWDFSLHEMANHDLPAIIDFVLDATGEEQLAYVGHSQGATLPLILLATQPNYNNKIRQLHLSAPAPFMANFPNPFLRKFGTKMVKIYSHENVFNLTPIADFLQRNLNKNCRLRQPFYFVICVFFEFLLLGDNFTKLEADYEIYPTFLTLFSPVVSKQQGLHFFQFIDSGKFRRFDYGRRENLKRYGSAEPPAYDLKLVTAPTFIYCAERDGVVSKRDLEHLREVLPNVVRFKLLKNYNHLDFDVGLNAREEVHTDLLRWMNRETKSWNQITQRSSNLSRSIGN
| Type | Start | End | Length |
| CDS |
800 |
1804 |
1005 |
| CDS |
1910 |
2110 |
201 |
| intron |
1805 |
1909 |
105 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001953092 |
GF17389 [Drosophila ananassae] gb|EDV41675.1| GF17389 [Drosophila ananassae] |
2e-61 |
| InterPro |
IPR006693 |
Partial AB-hydrolase lipase domain |
|
| InterPro |
IPR000073 |
Alpha/beta hydrolase fold-1 |
|
| Gene Ontology(BP) |
GO:0006629 |
lipid metabolic process |
|
| Pfam |
PF00561.15 |
alpha/beta hydrolase fold |
3.4e-17 |
| Pfam |
PF06057.6 |
Bacterial virulence protein (VirJ) |
0.021 |
| Pfam |
PF12695.2 |
Alpha/beta hydrolase family |
1.9e-09 |
| Pfam |
PF12146.3 |
Putative lysophospholipase |
0.011 |
| Pfam |
PF12697.2 |
Alpha/beta hydrolase family |
1.2e-14 |
| Pfam |
PF04083.11 |
Partial alpha/beta-hydrolase lipase region |
4e-14 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.09382 |