MidgeBase gene description page [Pn.16275]
Outline
| Gene ID | Pn.16275 |
| Type | Protein coding gene |
| Scaffold | PnScaf36994 |
| Start | 9731 |
| End | 12183 |
| Direction | + |
Sequence
Transcript: 2172 (bp)
ATGTTTTATGCACACATAGTATTGGCAAAGAAGGGTCCGTTGAGTCGGATCTGGCTCGCGGCCCATTGGGACAAGAAACTGACAAAGGCCCACGTATTCGAGACGAACATTGAACAGTCTGTAGATGGTATACTGCAGCCTAAAGTTAAGCTCGCCCTCAGGACGTCCGGTCACCTGCTGCTGGGTGTGGCGCGCATTCACTCGAGGAAGGCGAAATACCTGCTCGCCGACTGCAATGAAGCGTTTGTCAAAATCAAGATGGCTTTTCGGCCCGGCATGGTCGACTTGCCGGAGGAGCATCGCGAAGCAGCCGTGAATGCAATTACTCTTCCCGAAGTTTTTCACGACTTCGATACGGCGTTGCCTGAATTAAATGACGTCGACATCGAAGCGCAGTTCTCGATCAACCAGTCGAGAGCCGATGAGATTACGATGCGCGAGGACTACGGCTCCTTGCCCATGAACATGCATGACGACGGCTTCGGAGAGATCGGCTTCGACGGCTCCGACTTGGTGCGCGATGTGCCCACCATAGATGACGATTTGTTTTCTGAAACAATCCACCAAGGACCAGACATCGAGCAGAACAAGACGGCGTCGCGCTCGATGTTGGGCGGCATTGACGCTCATCCTCTTGACGACGACTTCGGCGACGATTTCGGCGAGTCGGGAGGTCTATTCGAGGGCGACATTTTCGCGGACCCGCCGACGACAATCGACGAGGCCTCGGCGCCGGTGAACCAAGGAAACATGACTTCGCGAACGGACGACGACGATTCGGATGACGGAGGGCATTTCGATGGCGGAGCCTCGCCGGCGCTGTCGAGCACGAGTTCGCGGCCTCCCTCGACCATCCAAGCACCAATCAATCAGTTCTCGGAGGGACAGCCCAGCTTCATGAACAGTTTGGACCAGCAGCCGGGAACCAGCAAAGATCTGCTCAACGACAGCGACCCAGACAAGACGGCACTAGTTAACGAGGAGGAGTCATTCGCACTGGCACCGATCGACGCGTCCGCACTGAAAGGTGTGACGAAGGCGAAGCGCAAGCGAAAGCTCATCATCGATGAGGTGAAGAACATTTCCGGCGAAGAGATGAAGGCGCAGCTGGCAAACACGGCCGACATCATTACGTCGCTCGACCTGGCGCCGCCCACGAAGAAGCTCATGAACTGGAAGGAGACGGGCGGCGTCGAGAAGCTCTTCACGCTTCCGTCACGACTCCTTCCCGCGCGTGCACTCTCGAAAATCTACCAGATGAATCTGATTTTCACTACCGGCATCATCGAGGAGGACTTCTCGACGCTGGGACCCGCGGACATTCTGGCGCTGGACTCGCAAGCGCTCGAGCCGCTCTCCGAGTCGCCGTCGAAGCGAGGCCGAAAACGAAAGAACCTCGACGACACGGACGCGACGGATCTGTCGATACCGGAGCCGTTGCGCGACGTCAACGACTTACCGCCACAAACACCCGCGCCCATCGAACTGAAAGGAGACCTCGGCCTCGACACGAACCTCGGAAACGACATGAAACTGATGCCACCGCCCGCACAGCTGACGAGCCCGCGACAGTCGTTGATGATGAGCCCCACGCCGCACATACCGATGACGCCGGGCAACTTGGCGCACGGCAGTATGACGCCCGCCGGCTTCCACCACGGCCTCGACGAAAACAACCCGATGCTGAGCGATCCCGCGCTCAACAACCTCGACACGATTCCCAATCTCAACGCCGAGACAGTAAGCTCAATACTCGATGGTACAAACGGAATGGACCAGCATTTCGCAAACATGGGCTACGACGCCCAGGCCTCGCCCAGCGGCGGCATCTCCGAGAGAATAGCCAACGACTGGAACGACTACGACTACCCGGCGTCGGTGGGAGCGACCGGCGATGAGCAGATGGTCGACGAGTCGATAGAACAATTCGAGGAGCGAGTGCTGAACAAGCGAGCGGCCCAGTTGTTCGTGAACATTCGATCAAAGCTGCAGAAGCAAGACAAAATCTATCTGTCCGACATGACGTACAGGAACAGCAAGAAACAGGCGGCACAAAAGTTCTACTCGCTGCTGGTCTTGAAGAAATTCCAAATGCTCGACATCGAGCAAGAGCGACCGTTCGCAGACATTGTTTGCTCACGTGGTGAAGCATTCGATGATAACAAAACATTG
Protein: 724 (aa)
MFYAHIVLAKKGPLSRIWLAAHWDKKLTKAHVFETNIEQSVDGILQPKVKLALRTSGHLLLGVARIHSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEEHREAAVNAITLPEVFHDFDTALPELNDVDIEAQFSINQSRADEITMREDYGSLPMNMHDDGFGEIGFDGSDLVRDVPTIDDDLFSETIHQGPDIEQNKTASRSMLGGIDAHPLDDDFGDDFGESGGLFEGDIFADPPTTIDEASAPVNQGNMTSRTDDDDSDDGGHFDGGASPALSSTSSRPPSTIQAPINQFSEGQPSFMNSLDQQPGTSKDLLNDSDPDKTALVNEEESFALAPIDASALKGVTKAKRKRKLIIDEVKNISGEEMKAQLANTADIITSLDLAPPTKKLMNWKETGGVEKLFTLPSRLLPARALSKIYQMNLIFTTGIIEEDFSTLGPADILALDSQALEPLSESPSKRGRKRKNLDDTDATDLSIPEPLRDVNDLPPQTPAPIELKGDLGLDTNLGNDMKLMPPPAQLTSPRQSLMMSPTPHIPMTPGNLAHGSMTPAGFHHGLDENNPMLSDPALNNLDTIPNLNAETVSSILDGTNGMDQHFANMGYDAQASPSGGISERIANDWNDYDYPASVGATGDEQMVDESIEQFEERVLNKRAAQLFVNIRSKLQKQDKIYLSDMTYRNSKKQAAQKFYSLLVLKKFQMLDIEQERPFADIVCSRGEAFDDNKTL
| Type | Start | End | Length |
| CDS |
9731 |
9988 |
258 |
| CDS |
10056 |
10171 |
116 |
| CDS |
10248 |
10410 |
163 |
| CDS |
10479 |
11987 |
1509 |
| CDS |
12055 |
12180 |
126 |
| intron |
9989 |
10055 |
67 |
| intron |
10172 |
10247 |
76 |
| intron |
10411 |
10478 |
68 |
| intron |
11988 |
12054 |
67 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_313862 |
AGAP004560-PA [Anopheles gambiae str. PEST] gb|EAA09166.4| AGAP004560-PA [Anopheles gambiae str. PEST] |
0.0 |
| InterPro |
IPR006909 |
Rad21/Rec8-like protein, C-terminal, eukaryotic |
|
| InterPro |
IPR023093 |
Rad21/Rec8-like protein, C-terminal |
|
| InterPro |
IPR006910 |
Rad21/Rec8-like protein, N-terminal |
|
| Gene Ontology(CC) |
GO:0000228 |
nuclear chromosome |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF04824.11 |
Conserved region of Rad21 / Rec8 like protein |
1.8e-14 |
| Pfam |
PF04825.8 |
N terminus of Rad21 / Rec8 like protein |
1.9e-41 |
| Pfam |
PF02616.9 |
ScpA/B protein |
2.4e-05 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| C. quinquefasciatus |
CPIJ004083 |
| H. sapiens |
ENSP00000429342 |
| C. quinquefasciatus |
CPIJ004084 |
| B. mori |
BGIBMGA006465-TA |
| P. vanderplanki |
Pv.07954 |
| A. aegypti |
AAEL017135 |
| H. melpomene |
HMEL007924-PA |
| M. musculus |
ENSMUSG00000022314 |
| T. castaneum |
TC000968 |
| H. sapiens |
ENSP00000297338 |
| A. mellifera |
GB13290-PA |
| A. gambiae |
AGAP004560 |
| D. melanogaster |
FBgn0260987 |
| P. humanus |
PHUM127690-PA |
| H. sapiens |
ENSP00000427923 |
| N. vitripennis |
NV14713-PA |
| D. plexippus |
DPOGS208299PA |
| S. invicta |
SI2.2.0_03308 |