MidgeBase gene description page [Pn.16274]
Outline
| Gene ID | Pn.16274 |
| Type | Protein coding gene |
| Scaffold | PnScaf36994 |
| Start | 6702 |
| End | 9142 |
| Direction | + |
Sequence
Transcript: 2193 (bp)
ATGACAGAATTAGCTCCCGCGCCTGGTTTTAGTGACCCTAATCAAACTCTTTCCGGTCCCATTATTGGAATTATCTATCCGCCGCCCGAAGTACGAAATATTGTTGATAAAACTGCAAGTTTCGTGGCGAGAAATGGTTTTGAGTTCGAGAAAAGGATTCATCAGAGCGAGAAGGGAAATAAAAAATTCAGTTTCCTTAATCCCGGCGATCCATATCATGCATATTACCAGCACAAGGTCCAAGACTTCAAGGAAGGAACTGCAAAACCCAGTTCCCAAACAACACTTCCCGGCATTCAGAAGCTCACAATCTCGCAAAAGCAGCAAGAGTTGTTGAAGCAAGCAACAGAGCAGCAGTTTCAGCCCAAAGATCCGCCGCCGGAATTCGAATTTATTGCTGATCCTCCTTCAATTTCTGCACTGGATCTGGACATCGTGAAATTGACGGCACAATTTGTGGCGCGTAATGGACGACAATTTCTCACAAATCTCATGAATCGCGAACAGAGAAACTTTCAGTTTGACTTTCTTCGCCCTCAGCATTCGCTCTTTCAATATTTCACAAAGCTACTCGAGCAGTACACTAAAATTCTGATTCCGCCGAAGGAGTTGCTGCCAAAATTGAAGACAGACGTCGATTCGAGCCGGGAAGGTGTAAACGCAATTCTCGATCAAGTAAAGTATCGTGCCAACTGGCTTAAGCACGAAGAAGCCCAGAAGAGGCGCGAAGAAGAGAAAGTTGAGCGCGAGAGAGTGGCGTACGCTCAAATCGACTGGCATGACTTCGTCGTTGTCGAGGTTGTTGAGTACCAGCCCTTTGAAAGTGGTAATTTCCCAGCTCCTACCACGCCCGAGGAAGTCGGTGCTCGCGTCATTATGGAGCAGCGCTATCAAGAGGACGACAACGACATTGAAATGCAGATTGAGTCGGACGAAGAGCTCTCAAACGACCAGCAAGTTCCTCATCAGAACGTCAAACTCTCTGTCATGGAGAATCGCGTAAAGGATAACGTTCAAGTGCAGGACATGGACGAGGCATCGAGTGACGAAGAGAACGGCTCCAATCAGCCTGCGCAAGTTGCTCCCGTCATGCCTCCGACGCATGACAAGGTCATTGTCAAGAAGTATGATCCCAAGCAAGCACAGAAGGTCGCCAAGCCTGCTCCAGCTTCAGACGAATATCTCATTTCGCCAATCACCGGCGAGAAGATTCCCGCATCGAAAGTCGCCGAGCATATGCGCATTGGTCTGCTCGATCCACGCTGGGTGGAACAGCGCGACAAGATGATCGAAAAGGTTCGCGAAGAAAATGTTTATGCGCCGGGTGCTGCGATCGAGGCGAGCTTGAAACAACTGGCAGAGCGTCGTACCGATATTTTCGGTGTCGGCGACGAAGAGGCGGCCATTGGTAAAAAGTTGGGCGAGGAGGAACCGAGAAAAGATGATCGCGTTACTTGGGACGGACACACGAGCAGCGTCGAGGCAGCAACGCGTGCTGCTGCAAGAAACGTTTCGCTCGAGGATCAAATTCATCAAATACACAAAGTCAAAGGCTTGTTGCCGGACGAGGAGAAGGAGAAGATCGGGCCAAAGCCCATGTCATCAGGATCGACTGTTTCCGCGCCACCGAAGCCTTCGATGTCTGCCAACAATCCTCCGCATATTCAAAACATTGCGCACCACTCTGCTCCGCCGATGCCAGCCGTTCCACCGCCACCCGTGTTGATGATGCAACAAATGAGGCCACTACGTCCGCCACCTCTGATTCCACCACCGTTTGGATTTCCTGTTCCGATGCCGCCACAACTGGCACCGGCACCTCCCGTTATGGAGGTCATGCCCGAAGAAGAGCCGCCAAACAAAAAGTCGAGACAAGAGGACAACCTCATTCCAGAAGACGTATTTATGCAACATCACAAGAGTCCGATAACGATTCAAGTTCAAGTGCCGACGTCGAGCGATAAGCCCGAGTGGAAGTTGAACGGTCAGCTGTTGTCGATCAACATCGGTCTCGCTGATACGATTCAAAAACTCAAGCAGAGAGTACAAGAGGAGACAGACATGCCGCCGGCGAAGCAGAAAATATCGCACGACGGCATTTTCTTCAAAGACAGCAACTCAATCGCATACTACAACTTGCTGTCTGGAGCAACCGTGCACTTGCAGATTAAGGAGAGAGGCGGTCGCAAAAAA
Protein: 731 (aa)
MTELAPAPGFSDPNQTLSGPIIGIIYPPPEVRNIVDKTASFVARNGFEFEKRIHQSEKGNKKFSFLNPGDPYHAYYQHKVQDFKEGTAKPSSQTTLPGIQKLTISQKQQELLKQATEQQFQPKDPPPEFEFIADPPSISALDLDIVKLTAQFVARNGRQFLTNLMNREQRNFQFDFLRPQHSLFQYFTKLLEQYTKILIPPKELLPKLKTDVDSSREGVNAILDQVKYRANWLKHEEAQKRREEEKVERERVAYAQIDWHDFVVVEVVEYQPFESGNFPAPTTPEEVGARVIMEQRYQEDDNDIEMQIESDEELSNDQQVPHQNVKLSVMENRVKDNVQVQDMDEASSDEENGSNQPAQVAPVMPPTHDKVIVKKYDPKQAQKVAKPAPASDEYLISPITGEKIPASKVAEHMRIGLLDPRWVEQRDKMIEKVREENVYAPGAAIEASLKQLAERRTDIFGVGDEEAAIGKKLGEEEPRKDDRVTWDGHTSSVEAATRAAARNVSLEDQIHQIHKVKGLLPDEEKEKIGPKPMSSGSTVSAPPKPSMSANNPPHIQNIAHHSAPPMPAVPPPPVLMMQQMRPLRPPPLIPPPFGFPVPMPPQLAPAPPVMEVMPEEEPPNKKSRQEDNLIPEDVFMQHHKSPITIQVQVPTSSDKPEWKLNGQLLSINIGLADTIQKLKQRVQEETDMPPAKQKISHDGIFFKDSNSIAYYNLLSGATVHLQIKERGGRKK
| Type | Start | End | Length |
| CDS |
6702 |
6798 |
97 |
| CDS |
6872 |
7057 |
186 |
| CDS |
7115 |
7259 |
145 |
| CDS |
7316 |
8655 |
1340 |
| CDS |
8715 |
9139 |
425 |
| intron |
6799 |
6871 |
73 |
| intron |
7058 |
7114 |
57 |
| intron |
7260 |
7315 |
56 |
| intron |
8656 |
8714 |
59 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001998227 |
GI23747 [Drosophila mojavensis] gb|EDW13688.1| GI23747 [Drosophila mojavensis] |
0.0 |
| InterPro |
IPR000061 |
SWAP/Surp |
|
| InterPro |
IPR022030 |
Pre-mRNA splicing factor PRP21-like protein |
|
| InterPro |
IPR000626 |
Ubiquitin |
|
| InterPro |
IPR019955 |
Ubiquitin supergroup |
|
| Gene Ontology(BP) |
GO:0006396 |
RNA processing |
|
| Gene Ontology(MF) |
GO:0003723 |
RNA binding |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF12230.3 |
Pre-mRNA splicing factor PRP21 like protein |
6e-45 |
| Pfam |
PF00240.18 |
Ubiquitin family |
3e-14 |
| Pfam |
PF01805.15 |
Surp module |
4e-41 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| D. plexippus |
DPOGS204107PA |
| P. vanderplanki |
Pv.07953 |
| C. quinquefasciatus |
CPIJ015416 |
| D. melanogaster |
FBgn0038464 |
| N. vitripennis |
NV12061-PA |
| S. invicta |
SI2.2.0_06548 |
| A. aegypti |
AAEL013818 |
| N. vitripennis |
NV12068-PA |
| A. mellifera |
GB11796-PA |
| A. gambiae |
AGAP011328 |
| T. castaneum |
TC004839 |
| P. humanus |
PHUM259560-PA |
| B. mori |
BGIBMGA013594-TA |
| H. sapiens |
ENSP00000215793 |
| M. musculus |
ENSMUSG00000002129 |
| H. sapiens |
ENSP00000390336 |
| H. melpomene |
HMEL010984-PA |