MidgeBase gene description page [Pn.16250]
Outline
| Gene ID | Pn.16250 |
| Type | Protein coding gene |
| Scaffold | PnScaf36554 |
| Start | 6272 |
| End | 7308 |
| Direction | + |
Sequence
Transcript: 828 (bp)
ATGCAGCGACTGGTTTGCTGTCCACGCTCGACAAAATTCTCAAGAGCTCTGTGCGAAGAGGAACCCCAATCGCAATCCGAGCTTATTTTTAAAATTGTAAATGGAAATGAAGCTTCACCCGGTGAATTTCCATTTCAAGCGGCGCTCGGCAGGAGAAATTTCGACGATCAAATTGAATTTAACTGTGGAGGATCAATTATCGCTGATGATATAATCCTCTCTGCGGCACATTGTTTCAACAGAGTGGATCGCTCAGCGACAATGGCTCGCCTAGGAAGATTATCTCTAGACATTAATGACATTGAAGATGATGGTGAGGTAGTTGATAAAGAAATAGAGAAAGTCGTGATACATCCACAATATGCATCAAGGACCAGATATAATGACATCGCTCTAGTAAAACTTGAGTCACCACTGGTATTCACGGACAGAATTAAGGCAATTTGTTTGTCCAGTAACGACATTGATGTGCCAAAACAATTTACAATCACCGGTTTTGGATCAACATCGCCCGAAAAAATGTCTAGATCCACTCGACTTCTCAAAGGTATCGTAAATGACTACTCACAAGAGCAATGCAAAGATCAGTACAAAGAGTCCAATGTTAACCTTATTGACGGCCAGTACTGTGCGAATAGTGATTCGGGAGTAGACGCTTGCCAAGGAGATTCTGGTGGACCACTGAGCTATGAAGATAAAAATGGAGCGTGGCATTTGTATGGAGTTATTTCACATGGTGCCTCGTGTGGTTCCACATTTCCAGCAGTTTATACGAAAGTCAACGAATATCTCGAATGGATAGGCGACGAAATGCTAAAACTTGAAGAT
Protein: 276 (aa)
MQRLVCCPRSTKFSRALCEEEPQSQSELIFKIVNGNEASPGEFPFQAALGRRNFDDQIEFNCGGSIIADDIILSAAHCFNRVDRSATMARLGRLSLDINDIEDDGEVVDKEIEKVVIHPQYASRTRYNDIALVKLESPLVFTDRIKAICLSSNDIDVPKQFTITGFGSTSPEKMSRSTRLLKGIVNDYSQEQCKDQYKESNVNLIDGQYCANSDSGVDACQGDSGGPLSYEDKNGAWHLYGVISHGASCGSTFPAVYTKVNEYLEWIGDEMLKLED
| Type | Start | End | Length |
| CDS |
6272 |
6550 |
279 |
| CDS |
6613 |
6672 |
60 |
| CDS |
6743 |
7103 |
361 |
| CDS |
7178 |
7305 |
128 |
| intron |
6551 |
6612 |
62 |
| intron |
6673 |
6742 |
70 |
| intron |
7104 |
7177 |
74 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EHJ76340 |
hemolymph proteinase 6 [Danaus plexippus] |
3e-44 |
| InterPro |
IPR009003 |
Peptidase cysteine/serine, trypsin-like |
|
| InterPro |
IPR001314 |
Peptidase S1A, chymotrypsin-type |
|
| InterPro |
IPR001254 |
Peptidase S1/S6, chymotrypsin/Hap |
|
| InterPro |
IPR018114 |
Peptidase S1/S6, chymotrypsin/Hap, active site |
|
| Gene Ontology(BP) |
GO:0006508 |
proteolysis |
|
| Gene Ontology(MF) |
GO:0004252 |
serine-type endopeptidase activity |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF13365.1 |
Trypsin-like peptidase domain |
0.00012 |
| Pfam |
PF00089.21 |
Trypsin |
2e-51 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. aegypti |
AAEL004524 |
| A. aegypti |
AAEL004518 |
| A. gambiae |
AGAP000571 |
| C. quinquefasciatus |
CPIJ014651 |