MidgeBase gene description page [Pn.16218]
Outline
| Gene ID | Pn.16218 |
| Type | Protein coding gene |
| Scaffold | PnScaf36236 |
| Start | 25634 |
| End | 26150 |
| Direction | + |
Sequence
Transcript: 453 (bp)
ATGGCTCCAAGAAAGAATAAGGTAGCGAAGGAAGAGGTCCAAGTCTCACTCGGACCACAAGTTCGCGAGGGCGAAATTGTTTTTGGCGTTGCTCACATCTATGCGAGCTTCAACGATACATTTGTTCACGTTACTGACTTGTCTGGCAAGGAAACCATTTCTCGCGTAACTGGTGGCATGAAAGTTAAGGCCGATCGTGACGAAGCTTCGCCCTACGCTGCTATGTTGGCTGCCCAAGATGTCGCTGAAAAATGCAAAACTCTCGGCATCACAGCCCTTCACATCAAATTGCGTGCTACTGGTGGAAACAGAACAAAGACACCAGGACCAGGAGCTCAGTCAGCCTTGAGAGCCTTGGCCCGTTCAAACATGAAAATTGGTCGTATCGAAGACGTCACTCCAATTCCATCAGATTCCACTCGCCGAAAGGGTGGCAGACGCGGTCGCCGTTTG
Protein: 151 (aa)
MAPRKNKVAKEEVQVSLGPQVREGEIVFGVAHIYASFNDTFVHVTDLSGKETISRVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNRTKTPGPGAQSALRALARSNMKIGRIEDVTPIPSDSTRRKGGRRGRRL
| Type | Start | End | Length |
| CDS |
25634 |
25870 |
237 |
| CDS |
25932 |
26147 |
216 |
| intron |
25871 |
25931 |
61 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001650616 |
40S ribosomal protein S14 [Aedes aegypti] ref|XP_001650617.1| 40S ribosomal protein S14 [Aedes aegypti] sp|Q1HR24.1|RS14_AEDAE RecName: Full=40S ribosomal protein S14 gb|ABF18303.1| 40S ribosomal protein S141 [Aedes aegypti] gb|EAT43298.1| 40S ribosomal protein S14 [Aedes aegypti] gb|EAT43299.1| 40S ribosomal protein S14 [Aedes aegypti] |
5e-74 |
| InterPro |
IPR001971 |
Ribosomal protein S11 |
|
| InterPro |
IPR018102 |
Ribosomal S11, conserved site |
|
| Gene Ontology(BP) |
GO:0006412 |
translation |
|
| Gene Ontology(CC) |
GO:0005840 |
ribosome |
|
| Gene Ontology(CC) |
GO:0005622 |
intracellular |
|
| Gene Ontology(MF) |
GO:0003735 |
structural constituent of ribosome |
|
| Pfam |
PF00411.14 |
Ribosomal protein S11 |
1.8e-40 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000385958 |
| N. vitripennis |
NV16304-PA |
| B. mori |
BGIBMGA002405-TA |
| H. melpomene |
HMEL004759-PA |
| A. gambiae |
AGAP002346 |
| C. quinquefasciatus |
CPIJ000875 |
| P. humanus |
PHUM285440-PA |
| H. sapiens |
ENSP00000429856 |
| P. vanderplanki |
Pv.00015 |
| T. castaneum |
TC011085 |
| A. mellifera |
GB17694-PA |
| C. quinquefasciatus |
CPIJ003943 |
| S. invicta |
SI2.2.0_11943 |
| D. plexippus |
DPOGS208928PA |
| C. quinquefasciatus |
CPIJ006101 |
| C. quinquefasciatus |
CPIJ014959 |
| D. melanogaster |
FBgn0004403 |
| C. quinquefasciatus |
CPIJ018446 |
| H. sapiens |
ENSP00000428509 |
| C. quinquefasciatus |
CPIJ003216 |
| H. sapiens |
ENSP00000385425 |
| H. sapiens |
ENSP00000311028 |
| A. gambiae |
AGAP000655 |
| M. musculus |
ENSMUSG00000024608 |
| D. melanogaster |
FBgn0004404 |
| C. quinquefasciatus |
CPIJ008067 |
| A. aegypti |
AAEL005266 |