MidgeBase gene description page [Pn.16198]
Outline
| Gene ID | Pn.16198 |
| Type | Protein coding gene |
| Scaffold | PnScaf36113 |
| Start | 31585 |
| End | 42126 |
| Direction | - |
Sequence
Transcript: 2694 (bp)
ATGTCGGCTCTGATGATATTGGTCGTAAAGAACGGTGAAAGAATTTACGAGATCTACTCGATAAAGATCAAGGCGGCCGAGGCTCCGTTGCCAAAAGCGTGGATTCTCGAAAAGTCAATCGACGGCACCAATTATGCGGCGTGGCAGTATTTCGCCTCGAGCAACGACGACTGCTTGTCACGCTATCGCCTCCCAGGTCGCAACAGCAATTACACGCTGCAGAGCAATGAAGAGATCACCTGCACCACCCAATATTCGGAGTCGATTCGCCTCAAGTACGGCGAGGCGAAGTTTGTCGTGATGTCGCAGCGAAACGACAGCGCCGACGACTTCACTCTCGCGCGCCACATTCGTCTGCGATTCCAGGGCCTCGTGCGGAGCCTCGACGAGATCGAGAACGACCGCACGCCCAAGTGGCAGCCCGACCAGAGCGACCTCCTCAAGCGCAGCTACTACGCGCTGCAGTCGATCATGGTAATCGGTCGCTGCCACTGCTCCGGCCATGCCGCCAAGTGCCGTGAGAGCGACGAAGGCGACGCCAGCAATCTACCGCAGTGCGAGTGCATGCACAACACCTGCGGAAAAAACTGCGAAAAATGCTGTCCACTCTTCAACCAGCGGCCGTTTCGCATCGGGACGCCGCAGAGGGAGAACAAGTGCGAGAAGTGCCAGTGCCATGGACATGCCGCCGAGTGTCGCTACAGCGCCGACATCGACGAGAGATCGCTGAGCGAGAATGTGCGCGGGAAGATGTCGGGCGGCGGAGTTTGCGTCAACTGTACGAAATTCACGACCGGAATAAATTGCGAGAAGTGCCTGCCCGGCTACTATCGCCCCAGCGGTCGAGCGCCAGACGACGAAGAGCCGTGCGTGCCGTGCGAATGTAGTGCCAAGGGCTCGATTGGCACCTGCAACCCAGACGGCGGCGAGTGCGTCTGCAGGCCGGGATTCAGCGGACGGCAGTGCGAAACCTGCACCGTTGGCTTCGGAGGGAGCGACTGCGAAAAGTGCAGCTGCGACGTGCGTGGAACGATTCCCGGCGGCGAATGCGACGACTCCTGCCAGTGCAAGTCGTACGTGAGGGGCGACAAGTGCGACACGTGCATGGACGGCTACTTCGCGCTGAGCTACGATAACCCTGACGGCTGCCTCAAGTGCATCTGCTCGGGCCTCGACACCACCTGCGAGAGCCACCGGGTGCGGCGGAATTTCGTGGAGACCCTCGAGGGCTGGACAGTGACCGACATCTCGAAGTCGCAGCTCGCCTCGCCGACGCGCGACAACGCCACCGGCTTCTACGTGTTCGGCATGTACGAGCTGCCGGAGGTGGAGGCCGTCTACTGGCTCGCGCCCGACGCCTATCTCGGCAACCTACTCGAGAGCTACGGCTCGCACTTCATGTTCCAGGTCGACTACGTGATTGTGCGCGGCGACACGAGCGGCAAGCCCACCAGCGGGCCCAACTTCATCCTCATCGGCCGGAACGGCATGAAGATCGCGTTTGGCGACGGAATTTTTACGAACACAAATGCGAGCGTCAGCGTGCCCCTCACCGAGGCGAGCTGGTATCATGTGCCGAAGAACGTGAGGGACATCATCACGAGGCTGCGGCGCACGGACTATCGCGGTGACCCAGTGACGAGGACTCAGTTCATGTCGGTCTTGAGCGATGTTGAGAGCATTTTGGTGCGCGGCACTTATCATACCGATCAGGCCGAGGCCATTCTGAAGCGAGCGACTCTCCATGCCGGCGATCTCATGATGAGATCAAACGAGGTCATCGAGGAAAGCGAGGATACTTCCGTGAGCTTGGTGGAAAAGTGCCACTGTCCTCCCGGTTACATGGGGCTCTCATGCGAGTCCTGCATGTTCGGCCACATCTCGGTCATCGAGGACTCTTCGACTCACGAGAAGGTCCTCAGGTGTCTGCCGTGCAACTGCAACGGTCACTCAGAAACATGCGACGTGGTGAAAAGCAAGTGCGGCGAGTGCACTCACAACACGACTGGAGAAAGATGTGAGCGCTGCCGCGACGGCTTCTACGGCGATGCAACGCGCGGAACATCAGACGATTGTCGACAGTGTGCGTGTCCGCTGACCATCGAGTCGAATAATTTCAGTGATAAGTGTATTCTCAAAGACGACGGTAATTACGAGTGTCTCAATTGCGCCCCTGGCCACAGCGGCGAGCACTGTGAAGTGTGCGACGACGGTTACTACGGAAATCCCTTGGAAATCGGCTCAAAGTGCAAGCGCTGCAAGTGCCGCGAGGACGAATCGTGCGATAAAATCACGGGCAAGTGCACGCAGTGCGAAGGAAATACCGAAGGATGGCGCTGCGAGCGCTGCAAAAAAGGCTTTTATGGCGACCCAATAATCGGTTGTGAGCCTTGCGCGTGCAGTTCGCAAGGTGCAGTGAGCAGTGTTTGTGACTCGGTCAGTGGAAAGTGCACGTGCAAAGCGAACTATACGGGAAAAAATTGTGACCAGTGCGAACGCGGTTTTGTGAATGTTTCGCTCAGTTGCGTGTCTTGCGAGTGCAATCGAAATGGCTCGCGCGATGCCTACTGCGATTCGAGCAGCGGCCAGTGTAGTTGCAAGGCGAACGTTCGCGGATTGAAATGCGAGGAGTGCGAGGAACTCTACTTTGGGCTGAACTTTGACGGCTGCGAAGCCAACTTCAAGAGCAAATTG
Protein: 898 (aa)
MSALMILVVKNGERIYEIYSIKIKAAEAPLPKAWILEKSIDGTNYAAWQYFASSNDDCLSRYRLPGRNSNYTLQSNEEITCTTQYSESIRLKYGEAKFVVMSQRNDSADDFTLARHIRLRFQGLVRSLDEIENDRTPKWQPDQSDLLKRSYYALQSIMVIGRCHCSGHAAKCRESDEGDASNLPQCECMHNTCGKNCEKCCPLFNQRPFRIGTPQRENKCEKCQCHGHAAECRYSADIDERSLSENVRGKMSGGGVCVNCTKFTTGINCEKCLPGYYRPSGRAPDDEEPCVPCECSAKGSIGTCNPDGGECVCRPGFSGRQCETCTVGFGGSDCEKCSCDVRGTIPGGECDDSCQCKSYVRGDKCDTCMDGYFALSYDNPDGCLKCICSGLDTTCESHRVRRNFVETLEGWTVTDISKSQLASPTRDNATGFYVFGMYELPEVEAVYWLAPDAYLGNLLESYGSHFMFQVDYVIVRGDTSGKPTSGPNFILIGRNGMKIAFGDGIFTNTNASVSVPLTEASWYHVPKNVRDIITRLRRTDYRGDPVTRTQFMSVLSDVESILVRGTYHTDQAEAILKRATLHAGDLMMRSNEVIEESEDTSVSLVEKCHCPPGYMGLSCESCMFGHISVIEDSSTHEKVLRCLPCNCNGHSETCDVVKSKCGECTHNTTGERCERCRDGFYGDATRGTSDDCRQCACPLTIESNNFSDKCILKDDGNYECLNCAPGHSGEHCEVCDDGYYGNPLEIGSKCKRCKCREDESCDKITGKCTQCEGNTEGWRCERCKKGFYGDPIIGCEPCACSSQGAVSSVCDSVSGKCTCKANYTGKNCDQCERGFVNVSLSCVSCECNRNGSRDAYCDSSSGQCSCKANVRGLKCEECEELYFGLNFDGCEANFKSKL
| Type | Start | End | Length |
| CDS |
31588 |
31607 |
20 |
| CDS |
39053 |
39711 |
659 |
| CDS |
39774 |
41746 |
1973 |
| CDS |
42085 |
42126 |
42 |
| intron |
31608 |
39052 |
7445 |
| intron |
39712 |
39773 |
62 |
| intron |
41747 |
42084 |
338 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001653373 |
laminin alpha-1, 2 chain [Aedes aegypti] gb|EAT47381.1| laminin alpha-1, 2 chain [Aedes aegypti] |
0.0 |
| InterPro |
IPR018031 |
Laminin B, subgroup |
|
| InterPro |
IPR000034 |
Laminin B type IV |
|
| InterPro |
IPR006210 |
Epidermal growth factor-like |
|
| InterPro |
IPR002049 |
EGF-like, laminin |
|
| InterPro |
IPR008211 |
Laminin, N-terminal |
|
| InterPro |
IPR013032 |
EGF-like, conserved site |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF00055.12 |
Laminin N-terminal (Domain VI) |
4.7e-16 |
| Pfam |
PF00052.13 |
Laminin B (Domain IV) |
1.2e-15 |
| Pfam |
PF12661.2 |
Human growth factor-like EGF |
0.015 |
| Pfam |
PF00053.19 |
Laminin EGF-like (Domains III and V) |
1e-62 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.10764 |
| Pn.16197 |
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000416470 |
| S. invicta |
SI2.2.0_15850 |
| H. sapiens |
ENSP00000463061 |
| P. humanus |
PHUM537140-PA |
| M. musculus |
ENSMUSG00000024421 |
| H. sapiens |
ENSP00000429488 |
| A. aegypti |
AAEL001477 |
| D. plexippus |
DPOGS203958PA |
| C. quinquefasciatus |
CPIJ004683 |
| H. sapiens |
ENSP00000430336 |
| H. sapiens |
ENSP00000252999 |
| D. melanogaster |
FBgn0261563 |
| D. plexippus |
DPOGS201845PA |
| M. musculus |
ENSMUSG00000019899 |
| D. melanogaster |
FBgn0002526 |
| M. musculus |
ENSMUSG00000032796 |
| A. gambiae |
AGAP007849 |
| B. mori |
BGIBMGA006097-TA |
| A. aegypti |
AAEL008773 |
| A. gambiae |
AGAP004993 |
| S. invicta |
SI2.2.0_80316 |
| A. mellifera |
GB14694-PA |
| N. vitripennis |
NV16818-PA |
| H. sapiens |
ENSP00000269217 |
| H. sapiens |
ENSP00000400365 |
| M. musculus |
ENSMUSG00000015647 |
| P. humanus |
PHUM394360-PA |
| C. quinquefasciatus |
CPIJ004682 |
| H. sapiens |
ENSP00000433260 |
| H. sapiens |
ENSP00000468316 |
| T. castaneum |
TC014773 |
| A. mellifera |
GB19669-PA |
| D. plexippus |
DPOGS201843PA |
| H. sapiens |
ENSP00000464836 |
| N. vitripennis |
NV15250-PA |
| C. quinquefasciatus |
CPIJ003989 |
| H. sapiens |
ENSP00000382432 |
| H. sapiens |
ENSP00000464107 |
| H. melpomene |
HMEL003937-PA |
| T. castaneum |
TC003460 |
| N. vitripennis |
NV15252-PA |
| H. sapiens |
ENSP00000230538 |
| H. sapiens |
ENSP00000374309 |
| A. gambiae |
AGAP007850 |
| T. castaneum |
TC003461 |
| P. humanus |
PHUM394240-PA |
| H. sapiens |
ENSP00000359711 |
| H. melpomene |
HMEL015657-PA |
| B. mori |
BGIBMGA006095-TA |
| H. sapiens |
ENSP00000374114 |
| H. sapiens |
ENSP00000359726 |
| H. sapiens |
ENSP00000466557 |
| P. vanderplanki |
Pv.12217 |
| P. vanderplanki |
Pv.00390 |
| M. musculus |
ENSMUSG00000019846 |
| B. mori |
BGIBMGA002018-TA |
| H. melpomene |
HMEL013518-PA |
| H. sapiens |
ENSP00000324532 |
| B. mori |
BGIBMGA006098-TA |
| H. sapiens |
ENSP00000462974 |
| H. sapiens |
ENSP00000462108 |
| H. sapiens |
ENSP00000462738 |
| P. vanderplanki |
Pv.12216 |
| A. mellifera |
GB11202-PA |