MidgeBase gene description page [Pn.16197]

Outline

Link to gbrowse

Gene ID Pn.16197
Type Protein coding gene
Scaffold PnScaf36113
Start 13110
End 29161
Direction -

Sequence

Transcript: 7419 (bp)

 ATGATGGAGTACAATGCGGAAGAGGTTTATCAACGTCGACGAAGACGATGGTTAACGTACGGACGTGCCTTACTCACAATGGGAATTTTGGGACTCGTAACTGTTGCCTTATACAGCGCGACGCACTTACGCGATGCGACAAGTTCACGGGATGAGGCTGCGGATAATGCGGAGTCATCGTCGGCGCGCATTGTGAATGCTAATGACCACAAAAGTGAGACGCGACAAAGTGGGTCGAGCGCTGACGATGTTGCAATAAAAAGTAGAGAATTAGTGAATAGAAATGATCAAAGAATAGTTAAGCGTGAAGTGAGCGCGCCAGAGACGCTGAAGCGTAGACAAATTGATAGAAATGATGAAAGAATATTGCCAAAGCTCGCGAGCAGCGAGAATGTGTTAGCTAATGAGATTCACGACGAAACGGCAGCGGAGAGTTTGGATAGTCAGCATCTGAAGCTACAGCAGCGGCGGCAGCAGTCGAACAACGATGTTCTACATCGGCACACAAATGACGACGCCGTTTACATCTACAAAGGCTACAAATGCATTCCCATTAGTAAGCCATCAAAGCAATTAGAAAATTTAAGGGCACGGCCACGAAGGAGAAATCTGAATCACTTTTGGCCGCAAGCAAGAACCCAAAACAACAGCAGCAGCAGCAGCAACAACAACAACAACAACAAAAACATCGGCAAGAATAAGAGGAAGAGGAGGAAAAGATTCTTCTTAATCGTAAACGTGTGTTGTAATTGCCACATGAGCGGCTCCGAGGATCGGGTTTGTAACTCGAAAACCGGGCAATGTAAGTGTCGTCCGCATGTCATCGGCCGAACGTGCGATCGCTGCGAGCACGGCTATTGGAACATCGACTCGAAGCGGGGATGCGAGGAGTGCGCATGTAACGGCGATGGAAGCGAGCAAGCGAGCTGTGACATCTACACGGGCGAATGTGCTTGTAAGACGGGCGTCGAGGGCGTCAAATGCGATCGCTGTAAGAGCGGCTTCTATGGCTTCTCCGCGAGCGGCTGTAAAAAGTGCAGCGTCTGTGACAGTCCGTCAAAGATTTGCGATCATGACACAGGTCGTTGCGTGTGTCCACCCCTCAGTCATGGCAGCGACTGCCAGCTCTGCTACCCGAACACATGGGGTTGGGAGCGGCTCAAGGGCTGCCGCAACTGCGAGTGCAATCAGGCCGGTTCTCTCAAGCAGTCGTGTGATGCAGCGACGGGTCAGTGCGAGTGCAAAGAAGGCTATGCAGGTCGTTTGTGCGACCACTGTGCACGTGGCTTTCACGGCTACCCCAACTGTCAGAAGTGCGGCTGCGACTTGCGCGGCTCGAGGATGCAAAGCGGCGACGAAATTGCAGTGGAATGCGACGAGCGGGGGCAATGTCCGTGCAAGGGATTGGTGACGGGGCTGAAGTGCGACGAATGCCGACAATCGACGTTCGGACTGTCGCTGTTCAACCCGCACGGCTGCACGCGCTGCTTCTGCTTCGGCCGATCGCAGACGTGCACGCAGAACGACCTCATCTGGGCGCAAGTGCGGCTCATGGGCCCGCGCAACATCTCGGTCAACTACATCAGCGACTATCACGTTCGCTTCTACCACGAGGAGGTCGAATACATCATCCTGTCGCACACGAAGAACAATCACGTTTACCGCGAGACGGCGCGCTACAAAATGCACCACAATCTGATGGTGATGCCGGGTCATTCGGGCGACATCACGATTGGCACGCGGCGCGCCTTCCACAGTCCGCTCTACGTGGACCTGCCGAAGGAGTTTCGCGGCGACAAGACGAGCAGCTACGGAGGCTTCCTCAACTTTACGCTGAGGACGTTCGAGTACCGGACGAATTATCACTACGAGCATCTGCAGGCTTTCCCGCTCGTTCAGATGCACACGCACTTTCATCTCACGCTCAACTATTACCACAACGAGCCCAACGACGATGTCGCCGCTTTCAACGTGATTCTGCACGAGTCCTACTGGCGGCACGCGTCCAACGGCTACAACATTAGTCGCGCCATCATGATGACTGCGCTGCAGAATGTCAAGCACATTTTCGTGCGAGTCACCACCTCGCAGGACTTTGTCGCTCTAACCCTCGAGAATGTGACGATGTCGGTCGGAATGCCGAGAAATGGCAACAACAATGCAGCGATAGCTTCGGGAATCGAAAAATGCGAATGTCCTGCGATGTACAACGGCGATTCGTGTCAAGATCCAGCGGAGGGCTTCTATCGATGGCGCAACACGACGACGCCCACCAATTTGCTCGAGGATCTCGTTGGAAAGGTTGTGCCTTGCGAGTGCAACGGCCGAAGCGACCAGTGCGACAAGGAGACTGGCGAATGCTTGAATTGCCTCGACAACACCGGCGGCTTCAACTGCGAGGTGTGCGACGAAGGCTTCTACGGCCACCCGGACGATCCGCAAGGCTGCCAGGCCTGTCCCTGTCCCGAAACGAACAAGAAGTTTGCGCGCGGCTGCTACGTCGACGAGCAGGGCGTTGCGTGCTTCTGCAAAGAGGGCTACAGCGGGCCGCTATGCGAGAAGTGCGACAGAGGCTTCTTCGGTCAACCGCACGAGCCGGAAGGCAGATGCGAGAGCTGCGACTGCAACATCGAGGGAATCGTTTCGGACGAGTGCGATTATCTCAACGGCCAGTGCAACTGCAAGAAAGGAGTGACCGGACGGCGGTGCGACAAGTGCGATCTGCCGCGGCATCTTCTCATCGACTACGAGTGCCAGCTCTGCGACAACTGCACGCAAACACTGCTCGACTCGGTCGACGAGATGATTTACCAGCTTCAAACGAACATCGACGGCGTTGATTTGCATAATTTGAAGGCGCCATGGCACAAGCTCAACGATTTAATTAACGAAACGGATCATTATTCAAATGAGTTCGACGAGTTCTTTCAGGCCGTCGATGCGGTCGATAATTTCCACGATATCGCTTCCGATGAGCTGCTCTTGAGATCGGAGACGCTGCTCAACCGCGCCAATCGCTTGAGCAATTCGGCGGAGAAAAAAACACAGAAACTCGAGAAACTAAAACTAGACGCCAACGGCCTTCTCGTGGATGCTCACGACCTCTCCGGCTCGATTCAGGAGACGATAATAAATCTCGAGAATTATGGGACGAGCGACCACCACGTAAAGCTGCCAAATGCCCTGAAAGAGGCTCGCATGTACTACGACGACATTGTCAGGCGCAACGACGAAATAACGGCCAACAACGACATCGAAAAGTGCGTCAAGGATCAATTTGAGTTCTGGAGCGATGAGCTGAAGGGAGCGAACGATCAGAAGGAGCGACTCGAGAAATTTTTGAGCGACCAGAAGATCTTCCACGAACGCCTCAGCGACCTCAAGAACCTCACTCATCGAGTGTTCCGCGACTCCTCAGAAACCGAGGCCTTCATCACGAAGAACAAAAATGACTTCGAGAAACTGAAGGAAAAAATTGCGGCAATCGAGGAAGAGTCCTCGCAGATCGACGATCTGCTGCAAGAGGACATTGTGGCTTCGTCTGCATCGCTCATGGAGTCAGTCGGCGACAACTTGGAAAAATCGAAAGCGACCAACGAAGATCTGCTGATGCTTCAGGAGGAGGTCAACCGGATGATTCGCGAGCGCGACACCGAAATTGCGAAAATCAAAGAGAAGGACATAGTGGATGCGAGAAAGCATGCGGAGGATCTTTCACAGCGCAGCAAAGTCATCGTCGGCTTGTTCCAGAACAGCAAAGACAGATCGCAGATGGCCGTGAAAGCGGTGACGTCGTACAGCAACATCACAGACACAATTAAGGCAGCAAAGGAGGCCGCGAAGTTGGCTCACGAGGCCGCGACTTACAGCAAGGAACAACTGGATCCGACAGATGCCGAAGAGGAGACGATGGAGGAGCGAGCCAACGACTTGTCGCTCGAGTCAAGCGCCATTCAGGACGACGCCGAAGAGCAGATCAAGAAGATCGAGGAAATGAAAGCGCAGCTGGCGCAGCAGCAGGAGTTCGTGAAGAATATGAGTGCAACGATCCACAGCAGCGGCAAGATGAACAACGACATGTCGGCGCAAATAACGAAGCTCAACAACAGCGAGTTGCGCAAGAGCGTGCAGGAGATGGCGAACTTAATGGACAACGTGCTGGAGGACGTGAGAAGCACGGACAGGGAGGTCAATGGAATCACAGAGAACGTCGAGGTGCTCAAGGAGAAGCTGAGTGAGCTGGATCCGGAGTGGGACACGAAATTCGGGCGCGCAGAGGAAAACATCGCGACTTCTTTGGGGAACATTCGAGAGGCGAGCATGATGCTGAGCGTGAATGAGCAGAGGATGGCGCAGCAGCAAGAAAAGTTCAAGGCGTGGAACGGAACGGTCTCCGCCAAGCTGCAGGAGCTGCGCGATAAAATCACGAAAGCCAAGCACGCCGCCGAGGGTATCCGCGTGTCGCTCGAGTCAAACGACGACTCATGCGTTCGCTCCTTCTACCCGCCAGTCACCGGCGTGACGACCTCCAACCAAATCGTGATGACTTTCGCGCTCACGTCGAGCAGCAACATCAACTCGCCGCTCATCTTCATTCAGGGCGAGGGCAGCAAGTTCATCGCGCTCGAAATGATCCGACGGAAGGTTCATTTGCGCTGGAACTTGGGCGGCGACAGCGGCAACATCGTGCACCCGCTCGAGATTGTGACGCGCGACCCGAAATACGACGACGCCTGGTACAAGGTGGAGGTGACGCGGAATTTGAACCTCGCGAGTATGTCGATAAGTCGAATGGCCAACAACGGCTCCTTCATGACTCCGCACGCAGCCGTCGATGGCGCGACCAGCATCAACAACACGCGCTTCGCGATGACCAAAAACGACCGGATTTACATTGGCGGAGTGCCGGCGAGCTTGCAGCCGCCCGACATGAAGGCCGCCAAAGGTCTCAGCGTGATCGTCCATCAGGTGCTCATCGATGGCTCGCAGATTGGACTCTGGCACTTTGCGTCGTCCGAGGGCAAGTGCGACGGCGGAATGGCCGGACCGACAGAGTCTTCGGACAGCTCCAACTCGAGGCACTTCAACGGCTATGGCTACTCGGTCGTGCACAGCATCAGTTCGCGGCCCTACCCGAAGAAGCTCTTCTCGCTCCAAATGACCTTCCGCACGCTCGACGAGAACGCCCTGCTGTTCCTCACCGTCGATGAGAAAAATAACCGCTCGATTTCGCTGACGCTGCACGAGGGCAAGCTCGTCTTCCGCATCGACTACGGCGACGAGTCGCTGCTCGAGATCAACACCACGAACCGCTTCAACACCGGCGAGTGGGTGAGCGTCGAAGCAGCCCGCGAGTTCACGCCGCGCCGCAACACCGAAAACGGCAGCCTCAAAGTGAACAACGAGGAGTCGCAGACGGGATCGCCGTCGAAGCCGATCGTCAACTCGCAGCTGCCGGAGGTGTCGAAGGCGCCGTTCTACATCGGCGGCGTGCCGCCCGGCTTCGTCTCGGGTACGACCAAGGCTCCCGGCGCCGACCACGCTTTCTTTGGGTGTATGCGCGACATCCAAATCAATGGCGAGTACTTCGACCCGTTCGAGAGCCAGAATTACTACGGAATCGAGCCGCAGTGCAAGACGGCCATCTCGAAGGTCGGCTTCTACGGAAACGGCTATCTCGAGCTTCGGTCGCACACGCTGCGCAAGCGCGCCAACTTCGGCTTCGTCTTCCGCACGCTCCAGCCCGACTGCCTGCTGCTCTTCTCCGGCTTCCCGCCGCAGACCGTCGACGAGTTCGACGAGAAGGACATCCGCGGAAACTTCTCGGTGTCGCTGGTGAACGGCAACGTTCACGTGTGGATTGCCGCCGAAAAGGGCGCCATCCAGCTCGAGTCGAACCGGACGCTCAACGACGGCGAGTTTCACATCGTGAACGTCAATAAGTTCGGCCGGCGGTTCGAGCTGAGGATCAACGACCAGCTCGAGGTGGTGAAGTCGCTGTCGGCATCGAAGGCGCTCATCTCTAGTCCCGAGGACCACGGCGGCCTCTTCTTCGGCGGCGTGCCCGACTTTCCCGAGTTCGACAACCTCATGCCGACAACGAACGGCCTGCGTGGCGCGATAAAGGACGTCGTGTTCAACAACCGGTCGATCTCGTTCGACTCGCCGATCAGTTTCAAGGACGTGAAATTCGGCGCCCTCGGGCCTATCATGGGCTCATCTTTCGAGCAGGAAATCAAGACGGAGCCGATTGGCGCCAAGTTCAAGGAGATCAAGGAGGGATGTCAGAGGGTCGGCAGCTACTCGTACGAGTCGAATGCCTTTAAGTTCGGCAATTCGCCTTATAGCTACTCCATGATCCAGATACCGCCGCGGCCCATTTGGCACCGGAACCTCAACATCCAGTTCGATTACCGGACCTTCTATCCCGACGGATTTCTCTTCGCCGTTCCTGACTCGCGAGACAAGCCAAAGCACTACGTGTATCTCTACCTGCGGAACGGCCACATTGTGCTCGTCCTCCGCAGCCGCAAGCGCGAGGAGCTTTCGATCCCGATCAAGTCCAACAACGGCCAGTGGCATCATGTCGCAATCGAGAGCAAGAATCACGTTCTCTCGCTGACGGTCTCGAGCAACGGAAAGAACAAGAACGAGAGTCAGAAGAGTGTAAAAATACCAAAGAAATTTTTCGCATCAAACATCTTCCTCATCGGCGGACTGCCGCCGAACGTTCCCTCGCTCCATCGCGAGGTGGTCACGAAGAAGGAGGACTTCAAGGGATGCATTCGAAGATTCACTGTCAACGGAATCACGCAGGATTTGACGCGGCAGTTCAACAACCTCGGGCAGTGCTTCCCGCGCATCGAGAAGGGCTCTTACTTCAGTGGCGATGCTTACGCAGAGTACAAAAAAGTCTTTAATGTGGGCAAGCATTTGGAGATCGAGATGGAGTTCAAGACGTCGGAATTGAACGGGATTTTGCTGAGCATATCGGAGCCGTCGGGCACACCGAGTCTCTCGATCGAAATCTCGGACGGACTGCTGGTGATGTCCTGCGACTTCAACAACGGCGAGATATTGCGTGCCGAGGCGAAGCTCTCTTCGAAATATTCTATCTGTGATAATAAGTGGCACAACGTGTCTGCCTTTTACGATACCCATCAAATAGCGATAAGAATCGACAACAAGGAGTCGGTGGTTGCATCGTCGAGTCGAAATGTAGGCATGCTGCAGACGAAAACGCCGCTCTTCATTGGCGGCATTCCAGAATCATCAGCTCCGCGCTCGATAATCATGCGTGAGAACTTCAAGGGATGCATTCGCAATGTGAAGCTGAATTCAGGACACAACGGCCTCGAGATCATCGACTGGACGGACATGGACAGACTGCACAATGTCCTCCTCAACGAGTGTCCTCGA 

Protein: 2473 (aa)

 MMEYNAEEVYQRRRRRWLTYGRALLTMGILGLVTVALYSATHLRDATSSRDEAADNAESSSARIVNANDHKSETRQSGSSADDVAIKSRELVNRNDQRIVKREVSAPETLKRRQIDRNDERILPKLASSENVLANEIHDETAAESLDSQHLKLQQRRQQSNNDVLHRHTNDDAVYIYKGYKCIPISKPSKQLENLRARPRRRNLNHFWPQARTQNNSSSSSNNNNNNKNIGKNKRKRRKRFFLIVNVCCNCHMSGSEDRVCNSKTGQCKCRPHVIGRTCDRCEHGYWNIDSKRGCEECACNGDGSEQASCDIYTGECACKTGVEGVKCDRCKSGFYGFSASGCKKCSVCDSPSKICDHDTGRCVCPPLSHGSDCQLCYPNTWGWERLKGCRNCECNQAGSLKQSCDAATGQCECKEGYAGRLCDHCARGFHGYPNCQKCGCDLRGSRMQSGDEIAVECDERGQCPCKGLVTGLKCDECRQSTFGLSLFNPHGCTRCFCFGRSQTCTQNDLIWAQVRLMGPRNISVNYISDYHVRFYHEEVEYIILSHTKNNHVYRETARYKMHHNLMVMPGHSGDITIGTRRAFHSPLYVDLPKEFRGDKTSSYGGFLNFTLRTFEYRTNYHYEHLQAFPLVQMHTHFHLTLNYYHNEPNDDVAAFNVILHESYWRHASNGYNISRAIMMTALQNVKHIFVRVTTSQDFVALTLENVTMSVGMPRNGNNNAAIASGIEKCECPAMYNGDSCQDPAEGFYRWRNTTTPTNLLEDLVGKVVPCECNGRSDQCDKETGECLNCLDNTGGFNCEVCDEGFYGHPDDPQGCQACPCPETNKKFARGCYVDEQGVACFCKEGYSGPLCEKCDRGFFGQPHEPEGRCESCDCNIEGIVSDECDYLNGQCNCKKGVTGRRCDKCDLPRHLLIDYECQLCDNCTQTLLDSVDEMIYQLQTNIDGVDLHNLKAPWHKLNDLINETDHYSNEFDEFFQAVDAVDNFHDIASDELLLRSETLLNRANRLSNSAEKKTQKLEKLKLDANGLLVDAHDLSGSIQETIINLENYGTSDHHVKLPNALKEARMYYDDIVRRNDEITANNDIEKCVKDQFEFWSDELKGANDQKERLEKFLSDQKIFHERLSDLKNLTHRVFRDSSETEAFITKNKNDFEKLKEKIAAIEEESSQIDDLLQEDIVASSASLMESVGDNLEKSKATNEDLLMLQEEVNRMIRERDTEIAKIKEKDIVDARKHAEDLSQRSKVIVGLFQNSKDRSQMAVKAVTSYSNITDTIKAAKEAAKLAHEAATYSKEQLDPTDAEEETMEERANDLSLESSAIQDDAEEQIKKIEEMKAQLAQQQEFVKNMSATIHSSGKMNNDMSAQITKLNNSELRKSVQEMANLMDNVLEDVRSTDREVNGITENVEVLKEKLSELDPEWDTKFGRAEENIATSLGNIREASMMLSVNEQRMAQQQEKFKAWNGTVSAKLQELRDKITKAKHAAEGIRVSLESNDDSCVRSFYPPVTGVTTSNQIVMTFALTSSSNINSPLIFIQGEGSKFIALEMIRRKVHLRWNLGGDSGNIVHPLEIVTRDPKYDDAWYKVEVTRNLNLASMSISRMANNGSFMTPHAAVDGATSINNTRFAMTKNDRIYIGGVPASLQPPDMKAAKGLSVIVHQVLIDGSQIGLWHFASSEGKCDGGMAGPTESSDSSNSRHFNGYGYSVVHSISSRPYPKKLFSLQMTFRTLDENALLFLTVDEKNNRSISLTLHEGKLVFRIDYGDESLLEINTTNRFNTGEWVSVEAAREFTPRRNTENGSLKVNNEESQTGSPSKPIVNSQLPEVSKAPFYIGGVPPGFVSGTTKAPGADHAFFGCMRDIQINGEYFDPFESQNYYGIEPQCKTAISKVGFYGNGYLELRSHTLRKRANFGFVFRTLQPDCLLLFSGFPPQTVDEFDEKDIRGNFSVSLVNGNVHVWIAAEKGAIQLESNRTLNDGEFHIVNVNKFGRRFELRINDQLEVVKSLSASKALISSPEDHGGLFFGGVPDFPEFDNLMPTTNGLRGAIKDVVFNNRSISFDSPISFKDVKFGALGPIMGSSFEQEIKTEPIGAKFKEIKEGCQRVGSYSYESNAFKFGNSPYSYSMIQIPPRPIWHRNLNIQFDYRTFYPDGFLFAVPDSRDKPKHYVYLYLRNGHIVLVLRSRKREELSIPIKSNNGQWHHVAIESKNHVLSLTVSSNGKNKNESQKSVKIPKKFFASNIFLIGGLPPNVPSLHREVVTKKEDFKGCIRRFTVNGITQDLTRQFNNLGQCFPRIEKGSYFSGDAYAEYKKVFNVGKHLEIEMEFKTSELNGILLSISEPSGTPSLSIEISDGLLVMSCDFNNGEILRAEAKLSSKYSICDNKWHNVSAFYDTHQIAIRIDNKESVVASSSRNVGMLQTKTPLFIGGIPESSAPRSIIMRENFKGCIRNVKLNSGHNGLEIIDWTDMDRLHNVLLNECPR 
Type
Start
End
Length
CDS 13113 13264 152
CDS 13509 13734 226
CDS 13800 13933 134
CDS 14055 14508 454
CDS 14580 14741 162
CDS 15260 16333 1074
CDS 16786 17550 765
CDS 17619 18079 461
CDS 18141 19155 1015
CDS 19213 19430 218
CDS 19521 19914 394
CDS 19981 20236 256
CDS 20330 21404 1075
CDS 21574 21864 291
CDS 27947 28088 142
CDS 28562 29161 600
intron 13265 13508 244
intron 13735 13799 65
intron 13934 14054 121
intron 14509 14579 71
intron 14742 15259 518
intron 16334 16785 452
intron 17551 17618 68
intron 18080 18140 61
intron 19156 19212 57
intron 19431 19520 90
intron 19915 19980 66
intron 20237 20329 93
intron 21405 21573 169
intron 21865 27946 6082
intron 28089 28561 473

Auto annotation result

Program/Analysis
Accession
Description
Score/Expectation
BLASTP/NCBI-nr XP_001846244 laminin alpha-1, 2 chain [Culex quinquefasciatus] gb|EDS43070.1| laminin alpha-1, 2 chain [Culex quinquefasciatus] 0.0
Gene Ontology(BP) GO:0007155 cell adhesion
Gene Ontology(BP) GO:0030334 regulation of cell migration
Gene Ontology(BP) GO:0045995 regulation of embryonic development
Gene Ontology(BP) GO:0030155 regulation of cell adhesion
Gene Ontology(CC) GO:0005606 laminin-1 complex
Gene Ontology(CC) GO:0005604 basement membrane
Gene Ontology(MF) GO:0005515 protein binding
Gene Ontology(MF) GO:0005102 receptor binding
InterPro IPR018031 Laminin B, subgroup

Expression level (RPKM)

Paralog/Ortholog genes

Paralogous genes

Gene ID
Pn.10764
Pn.16198

Orthologous genes

Species
Gene ID
A. aegypti AAEL001477
A. aegypti AAEL008773
A. gambiae AGAP007849
A. gambiae AGAP004993
A. gambiae AGAP007850
A. mellifera GB14694-PA
A. mellifera GB19669-PA
A. mellifera GB11202-PA
B. mori BGIBMGA006097-TA
B. mori BGIBMGA006095-TA
B. mori BGIBMGA002018-TA
B. mori BGIBMGA006098-TA
C. quinquefasciatus CPIJ004683
C. quinquefasciatus CPIJ004682
C. quinquefasciatus CPIJ003989
D. melanogaster FBgn0261563
D. melanogaster FBgn0002526
D. plexippus DPOGS203958PA
D. plexippus DPOGS201845PA
D. plexippus DPOGS201843PA