MidgeBase gene description page [Pn.16133]
Outline
| Gene ID | Pn.16133 |
| Type | Protein coding gene |
| Scaffold | PnScaf35751 |
| Start | 19788 |
| End | 20685 |
| Direction | - |
Sequence
Transcript: 282 (bp)
ATGTCTGAAGAAAAAAAGGATAACAAGGGAAGCGAAAGTGAGCACATCAACTTGAAAGTCTTGGGTCAAGACAATGCAGTCGTCCAATTTAAAATCAAACGTCACACACCTTTGCGAAAATTGATGAATGCATATTGTGACCGTGCTGGGCTGTCAATGCAAGTCGTTAGATTCCGATTCGATGGCTCGCCCATCAATGAAAATGACACACCGACTTCGCTTGAAATGGAAGAAGGAGACACAATTGAAGTTTACCAACAGCAAACCGGTGGAGGATATAAC
Protein: 94 (aa)
MSEEKKDNKGSESEHINLKVLGQDNAVVQFKIKRHTPLRKLMNAYCDRAGLSMQVVRFRFDGSPINENDTPTSLEMEEGDTIEVYQQQTGGGYN
| Type | Start | End | Length |
| CDS |
19791 |
19925 |
135 |
| CDS |
19997 |
20125 |
129 |
| CDS |
20668 |
20685 |
18 |
| intron |
19926 |
19996 |
71 |
| intron |
20126 |
20667 |
542 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001861568 |
conserved hypothetical protein [Culex quinquefasciatus] gb|EDS35828.1| conserved hypothetical protein [Culex quinquefasciatus] |
1e-45 |
| InterPro |
IPR000626 |
Ubiquitin |
|
| InterPro |
IPR019955 |
Ubiquitin supergroup |
|
| InterPro |
IPR022617 |
Small ubiquitin-related modifier, SUMO |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF00240.18 |
Ubiquitin family |
3.1e-10 |
| Pfam |
PF11976.3 |
Ubiquitin-2 like Rad60 SUMO-like |
1.5e-24 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.08523 |
| S. invicta |
SI2.2.0_07820 |
| H. sapiens |
ENSP00000380995 |
| C. quinquefasciatus |
CPIJ011350 |
| A. gambiae |
AGAP001701 |
| A. gambiae |
AGAP000852 |
| H. sapiens |
ENSP00000391266 |
| M. musculus |
ENSMUSG00000020738 |
| N. vitripennis |
NV17372-PA |
| P. humanus |
PHUM530560-PA |
| H. sapiens |
ENSP00000409666 |
| H. sapiens |
ENSP00000405965 |
| A. aegypti |
AAEL013787 |
| A. aegypti |
AAEL015064 |
| H. sapiens |
ENSP00000330343 |
| A. mellifera |
GB16812-PA |
| T. castaneum |
TC003790 |
| B. mori |
BGIBMGA011581-TA |
| H. sapiens |
ENSP00000318635 |
| D. plexippus |
DPOGS212269PA |
| H. sapiens |
ENSP00000380990 |
| D. melanogaster |
FBgn0264922 |