MidgeBase gene description page [Pn.16093]
Outline
| Gene ID | Pn.16093 |
| Type | Protein coding gene |
| Scaffold | PnScaf35654 |
| Start | 25069 |
| End | 26804 |
| Direction | + |
Sequence
Transcript: 1068 (bp)
ATGTTTTCAAGTGGACCTAACTACAATAAACTAAAAACCAATCTGAGATTGGCCGTCAATCGTCTCAAGCTTTTGGAGAAAAAGAAGGTCGAGACGAATCAAAAGGCCCGAAAGGAAATCGCAGATTTCCTCGAGATAAACAAGGCCGATCGAGCGAGAATTCGAGTCGAACACATCATCAGAGAAGACTATCTCGTCGAAGCAATGGAAATTCTCGAGCTCTATTGCGATTTGATTCTTGCCAGATTCGGGCTTATAACGCAGCTAAAGGAACTGGATGAAGGAATTTCTGAAGCGGTTTCAAGCATTATTTGGATTGCACCGAGATTAGTTTCGGATGTTGCAGAACTAAAAATCGTCTCTGATCAATTGAGTCTCAAGTATGGGAAGCAATATGCCGACGCATGCAGAGCGTCTGTGCCACCAGCGAATGTCTCCGAAAAGCTGCAACACAAGATGAGCATTCAAGCTCCACCAAAGCTACTGGTTGAGAAATATCTAATTGAGATAGCTAAAATTTACAACATCGACTACGAGCCCGATCAATCGATTATGAAGAGCGACTCTCGGCCCGAAGGGTTTCTCATTGATTTTGGTGACAAAAACAATTTGAACGGCGGTGCCGGCAATAGCAATGGCGGAGGTGGAATGGTCTTGCCGCCAAACCCGGGATTTATCGCTTATCCGCAGCCTCCTCAAATTCCCATTTTGCCGCATCCGCCAGCTTTCAACTATCCGTCATCATCGTCGTCGTCCTCGTTTGCTCCAAACGCTCCTCCTTTCAACTACAACATACCACCTATGCCTCAACAAAGCGCAATGCACCCACCACCGCCACTGCCCGGCAGCGACTCGGAGAAAAAGGATTTGAACGTCAACTTTTTGGACTTTGCTCCAAATATGGCTCTACCAAAACCTGCTCCGCGCTCAAAGGTCTTACCAGAATTGCCGAACGTCCCAACTTCAGGCTTCCCCACAGACGGAAATTCAAATGCTAATGCTGCTGACGACTCTGAGATTGATTTTGATGACTTGACGCGCCGCTTTGAAGAGTTGAAGAAACGACAT
Protein: 356 (aa)
MFSSGPNYNKLKTNLRLAVNRLKLLEKKKVETNQKARKEIADFLEINKADRARIRVEHIIREDYLVEAMEILELYCDLILARFGLITQLKELDEGISEAVSSIIWIAPRLVSDVAELKIVSDQLSLKYGKQYADACRASVPPANVSEKLQHKMSIQAPPKLLVEKYLIEIAKIYNIDYEPDQSIMKSDSRPEGFLIDFGDKNNLNGGAGNSNGGGGMVLPPNPGFIAYPQPPQIPILPHPPAFNYPSSSSSSSFAPNAPPFNYNIPPMPQQSAMHPPPPLPGSDSEKKDLNVNFLDFAPNMALPKPAPRSKVLPELPNVPTSGFPTDGNSNANAADDSEIDFDDLTRRFEELKKRH
| Type | Start | End | Length |
| CDS |
25069 |
25192 |
124 |
| CDS |
25249 |
25313 |
65 |
| CDS |
25402 |
26100 |
699 |
| CDS |
26548 |
26592 |
45 |
| CDS |
26667 |
26801 |
135 |
| intron |
25193 |
25248 |
56 |
| intron |
25314 |
25401 |
88 |
| intron |
26101 |
26547 |
447 |
| intron |
26593 |
26666 |
74 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001843898 |
conserved hypothetical protein [Culex quinquefasciatus] gb|EDS35230.1| conserved hypothetical protein [Culex quinquefasciatus] |
1e-107 |
| InterPro |
IPR005061 |
Domain of unknown function DUF292, eukaryotic |
|
| Pfam |
PF03398.9 |
Regulator of Vps4 activity in the MVB pathway |
4.6e-56 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| M. musculus |
ENSMUSG00000031729 |
| H. sapiens |
ENSP00000330408 |
| N. vitripennis |
NV12831-PA |
| H. sapiens |
ENSP00000455860 |
| H. sapiens |
ENSP00000438399 |
| H. melpomene |
HMEL010700-PA |
| H. sapiens |
ENSP00000414942 |
| D. plexippus |
DPOGS210038PA |
| P. humanus |
PHUM401810-PA |
| C. quinquefasciatus |
CPIJ002229 |
| P. vanderplanki |
Pv.08830 |
| D. melanogaster |
FBgn0035715 |
| H. sapiens |
ENSP00000457844 |
| H. sapiens |
ENSP00000368076 |
| A. aegypti |
AAEL001385 |
| H. sapiens |
ENSP00000455805 |
| T. castaneum |
TC014759 |
| S. invicta |
SI2.2.0_08075 |
| B. mori |
BGIBMGA000469-TA |
| H. sapiens |
ENSP00000368075 |
| H. sapiens |
ENSP00000457646 |
| A. gambiae |
AGAP005882 |
| A. mellifera |
GB20011-PA |