MidgeBase gene description page [Pn.16067]
Outline
| Gene ID | Pn.16067 |
| Type | Protein coding gene |
| Scaffold | PnScaf35523 |
| Start | 43993 |
| End | 45479 |
| Direction | + |
Sequence
Transcript: 1290 (bp)
ATGGGTGAACGAGCTGAAGTTGCAGAAGCATTCGACAACGATGCAGTCGAAGAGCGTGTAATAAATGAGGAGTACAAAATTTGGAAGAAGAACACTCCGTTCCTCTATGATCTCGTGATGACTCATGCCTTGGAATGGCCATCGTTAACTGCCCAATGGCTGCCGGACGTAACGAAACCCGAGGGAAAAGACTACACAGTTCATCGCTTGATTCTCGGCACGCACACATCGGACGAACAGAATCACTTGCTCATCGCCAGCGTTCAGTTGCCGAATGAGGATTTCCAGTTCGACGCGAGTCACTACGACAACGAAAAAGGCGAGTTCGGTGGCTTCGGCAGCGTCTCGGGAAAGATTGAGATCGAAATTAAAATCAACCACGAAGGTGAAGTCAATAGAGCGCGCTTCATGCCTCAAAATCCGTGCGTTATTGCCACCAAAACTCCCTCGTCCGACGTTCTCGTCTTTGACTACACCAAGCATCCCAGCAAGCCCGAGCCCTCGGGAGAGTGTCACCCAGACTTGCGCCTGCGAGGACATCAGAAGGAAGGTTACGGTCTTTCGTGGAATCCAAACTTGAATGGCTACCTTCTCTCTGCCAGTGACGATCATACAATTTGCTTGTGGGACATCAACGCCACGCCGAAAGAGTATCGCATTATCGACGCAAAGAACATCTTTACCGGCCATACTGCCGTCGTTGAGGATGTCGCATGGCATTTACTTCACGAATCTCTCTTCGGCTCCGTCGCTGACGACCAAAAGCTAATGATTTGGGACACGCGAGTGAACAACACCACGAAACCATCACACACCGTTGATGCTCACACCGCCGAAGTCAATTGCTTGAGTTTCAATCCTTATTCAGAATTCATTCTGGCAACTGGCTCTGCTGACAAGACTGTTGCATTGTGGGATTTGCGCAACTTGAAATTGAAGCTGCACTCGTTCGAGTCGCACAAAGACGAGATTTTCCAAGTCCAATGGTCGCCGCATAACGAGACAATCTTGGCTAGCAGTGGAACCGATCGTCGCTTGCATGTGTGGGACTTGTCAAAGATCGGAGAGGAACAAACTGCTGAGGATGCAGAGGACGGACCTCCGGAGCTTCTCTTCATTCATGGCGGACACACTGCAAAGATTTCAGACTTCTCGTGGAATCCCAACGAACCGTGGGTCATTTGCTCGGTGTCGGAAGACAATATCATGCAAGTATGGCAAATGGCGGAGAACATCTACAACGATGAGGAGCCCGAAGCAGCGGCGAACGAAATCGAGCCGGCAAATGCT
Protein: 430 (aa)
MGERAEVAEAFDNDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKPEGKDYTVHRLILGTHTSDEQNHLLIASVQLPNEDFQFDASHYDNEKGEFGGFGSVSGKIEIEIKINHEGEVNRARFMPQNPCVIATKTPSSDVLVFDYTKHPSKPEPSGECHPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEYRIIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRVNNTTKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQTAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEEPEAAANEIEPANA
| Type | Start | End | Length |
| CDS |
43993 |
44014 |
22 |
| CDS |
44137 |
44982 |
846 |
| CDS |
45055 |
45476 |
422 |
| intron |
44015 |
44136 |
122 |
| intron |
44983 |
45054 |
72 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001654079 |
retinoblastoma-binding protein 4 (rbbp4) [Aedes aegypti] ref|XP_001654080.1| retinoblastoma-binding protein 4 (rbbp4) [Aedes aegypti] gb|EAT38195.1| retinoblastoma-binding protein 4 (rbbp4) [Aedes aegypti] gb|EAT38196.1| retinoblastoma-binding protein 4 (rbbp4) [Aedes aegypti] |
0.0 |
| InterPro |
IPR022052 |
Histone-binding protein RBBP4 |
|
| InterPro |
IPR019775 |
WD40 repeat, conserved site |
|
| InterPro |
IPR017986 |
WD40-repeat-containing domain |
|
| InterPro |
IPR015943 |
WD40/YVTN repeat-like-containing domain |
|
| InterPro |
IPR001680 |
WD40 repeat |
|
| InterPro |
IPR020472 |
G-protein beta WD-40 repeat |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF00400.27 |
WD domain, G-beta repeat |
2.7e-41 |
| Pfam |
PF12265.3 |
Histone-binding protein RBBP4 or subunit C of CAF1 complex |
2.1e-31 |
| Pfam |
PF08662.6 |
Eukaryotic translation initiation factor eIF2A |
1.9e-05 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| M. musculus |
ENSMUSG00000057236 |
| S. invicta |
SI2.2.0_06743 |
| H. melpomene |
HMEL008346-PA |
| H. sapiens |
ENSP00000386068 |
| P. vanderplanki |
Pv.17608 |
| D. plexippus |
DPOGS215464PA |
| A. aegypti |
AAEL009882 |
| N. vitripennis |
NV17876-PA |
| H. sapiens |
ENSP00000362592 |
| H. sapiens |
ENSP00000362584 |
| H. sapiens |
ENSP00000398242 |
| T. castaneum |
TC006775 |
| P. humanus |
PHUM268780-PA |
| A. mellifera |
GB10144-PA |
| H. sapiens |
ENSP00000369427 |
| A. gambiae |
AGAP003228 |
| M. musculus |
ENSMUSG00000031353 |
| H. sapiens |
ENSP00000396057 |
| P. humanus |
PHUM268770-PA |
| D. melanogaster |
FBgn0263979 |
| H. sapiens |
ENSP00000369424 |