MidgeBase gene description page [Pn.16047]
Outline
| Gene ID | Pn.16047 |
| Type | Protein coding gene |
| Scaffold | PnScaf35350 |
| Start | 22 |
| End | 371 |
| Direction | + |
Sequence
Transcript: 267 (bp)
ATGCCGGGCTACACCTCGTGGGCCATCGGCTTGAGCTGCGCCGACATTGCGTCAGCATTGTTCAGAAACAGCAATGCCGTCAAGGCCGTCTCAACATTGGTCACAGGAATTCACGGAATTGATAAGGAGGTTTTCTTGTCACTCCCATGCGTTCTCAATGCCAACGGCGTTGCTTCGATTGTCAAGCAAAAATTGAGCGATGACGAGTTGGCCAAATTGCATGCCTCCGCTAACTTGATGGATGAGGTCCAACGCGGAATCAAATTT
Protein: 89 (aa)
MPGYTSWAIGLSCADIASALFRNSNAVKAVSTLVTGIHGIDKEVFLSLPCVLNANGVASIVKQKLSDDELAKLHASANLMDEVQRGIKF
| Type | Start | End | Length |
| CDS |
22 |
27 |
6 |
| CDS |
108 |
368 |
261 |
| intron |
28 |
107 |
80 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EFN62194 |
L-lactate dehydrogenase [Camponotus floridanus] |
3e-28 |
| InterPro |
IPR011304 |
L-lactate dehydrogenase |
|
| InterPro |
IPR022383 |
Lactate/malate dehydrogenase, C-terminal |
|
| InterPro |
IPR015955 |
Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal |
|
| Gene Ontology(BP) |
GO:0005975 |
carbohydrate metabolic process |
|
| Gene Ontology(BP) |
GO:0006096 |
glycolysis |
|
| Gene Ontology(BP) |
GO:0055114 |
oxidation-reduction process |
|
| Gene Ontology(CC) |
GO:0005737 |
cytoplasm |
|
| Gene Ontology(MF) |
GO:0016616 |
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
|
| Gene Ontology(MF) |
GO:0004459 |
L-lactate dehydrogenase activity |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF02866.13 |
lactate/malate dehydrogenase, alpha/beta C-terminal domain |
9.1e-11 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| S. invicta |
SI2.2.0_10962 |