MidgeBase gene description page [Pn.16025]
Outline
| Gene ID | Pn.16025 |
| Type | Protein coding gene |
| Scaffold | PnScaf35250 |
| Start | 386 |
| End | 2037 |
| Direction | + |
Sequence
Transcript: 1008 (bp)
ATGTGCCTCAACGAGGCGCGGCCCTTCGACGAGTGCGAGAAGAGCCTCGAGGCCGGCAAGATGCAGTTCTTCGTCGTCCAGCCGCGCTTCATGAACGTGGACATCCGCATCATCGTGGACGTGACGGAGGGCGAGATCGACCTGCAGATGACCAACAACGACGACTCGTTCGTGGTGTACGCGAACCAGTCGAGCGGCAGCAACGAGATCCTCCTGGACAGCAAGTACCAGTGGGTGCAGGACGACGACGACGGCGTCCGCGAGAACCTCAACATCACGCCGCTCGTGACGTCGAGCCGGCGCAACTTCGACAGTGGCGGCGGCGGCGCCGCCCAAGGCACCTCCACGCAGGTGTTTCGCGTCGTGGACCGCGTGGCCGGCGACGCGCTCGCCACGCACATCACGCTCAAGCAACCAAACATGCTGCTGCGCGTCTTCGGCATGCGCAACCGGCTGGTCATCACGCTGCCGCAGAACGTGCACAATCTGAGCGGCACGCGCTTTTTCGTCGCCATCCGCGCCGTCAGCCATGCGCGCACGACCAGCGGCCTCGTCTACTTCCGGCAGGACCAGCTGCACATCGATCTCTTCGTGTTCTTCTCAGTATTCTTCTCCTGCTTCTTCCTCTTTCTCGCCGTGTGCGTTGTCGTGTGGAAGGCGAAGCAGGCGGCCGACCTAAGGCGCGCCAGACAACGGCACGTGGTGGAGATGTTCAACATGGCCCAACGGCCGTACTCGTCCGTGACGCTGGACGTGACGCGCGACGCACCGACTGAATCTCAAAACTCACCAAAGACACGACAAAAGACAAAGATGTTGCACAACTACGTTCCGGTGGCGATCGAGTCGACGTCGGACAACATTGCGGCTGTGTGCACGATATTCGTAAGACTGCCCGAGACCAAGCAGCGCCGTCGGCCGGTGTGCCTGGGCTCGGCCCTCATCAGCGCGCCCAAGCCCAACATCTTCCTCAACAAGCCGCTCGCCCGCATTGCTCAGCAAAACGTT
Protein: 336 (aa)
MCLNEARPFDECEKSLEAGKMQFFVVQPRFMNVDIRIIVDVTEGEIDLQMTNNDDSFVVYANQSSGSNEILLDSKYQWVQDDDDGVRENLNITPLVTSSRRNFDSGGGGAAQGTSTQVFRVVDRVAGDALATHITLKQPNMLLRVFGMRNRLVITLPQNVHNLSGTRFFVAIRAVSHARTTSGLVYFRQDQLHIDLFVFFSVFFSCFFLFLAVCVVVWKAKQAADLRRARQRHVVEMFNMAQRPYSSVTLDVTRDAPTESQNSPKTRQKTKMLHNYVPVAIESTSDNIAAVCTIFVRLPETKQRRRPVCLGSALISAPKPNIFLNKPLARIAQQNV
| Type | Start | End | Length |
| CDS |
386 |
469 |
84 |
| CDS |
711 |
1315 |
605 |
| CDS |
1716 |
2034 |
319 |
| intron |
470 |
710 |
241 |
| intron |
1316 |
1715 |
400 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001648539 |
hypothetical protein AaeL_AAEL014347 [Aedes aegypti] gb|EAT33370.1| conserved hypothetical protein [Aedes aegypti] |
5e-69 |
| Pfam |
PF01708.11 |
Geminivirus putative movement protein |
0.17 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.02990 |
| Pn.15908 |
| Pn.16623 |
Orthologous genes
| Species |
Gene ID |
| T. castaneum |
TC014698 |
| A. gambiae |
AGAP008185 |
| N. vitripennis |
NV13207-PA |
| H. sapiens |
ENSP00000334219 |
| S. invicta |
SI2.2.0_14129 |
| H. melpomene |
HMEL011650-PA |
| D. plexippus |
DPOGS215815PA |
| H. sapiens |
ENSP00000367313 |
| P. humanus |
PHUM249660-PA |
| T. castaneum |
TC014697 |
| M. musculus |
ENSMUSG00000045039 |
| H. sapiens |
ENSP00000251268 |
| A. mellifera |
GB11186-PA |
| C. quinquefasciatus |
CPIJ009058 |
| A. aegypti |
AAEL014347 |
| A. mellifera |
GB14726-PA |
| T. castaneum |
TC014696 |
| D. melanogaster |
FBgn0031981 |
| B. mori |
BGIBMGA013556-TA |
| P. vanderplanki |
Pv.08226 |