MidgeBase gene description page [Pn.16024]
Outline
| Gene ID | Pn.16024 |
| Type | Protein coding gene |
| Scaffold | PnScaf35239 |
| Start | 225 |
| End | 2807 |
| Direction | - |
Sequence
Transcript: 1218 (bp)
ATGGACGAGTCCTACGACCTGAGCGTGTCGGAGCAGAGCGCCGTGCTGGAGTCGAGTTCGATCTGGGGAATTTTGCGGGGGCTCGAGTCGTTCTCGCAGCTTCTTTATTCGTCGCCCGACGGCCGCTTCCTCCTCATCAACGAGACGACGATCTACGACGAGCCGCGTTTCAAGCACCGCGGCCTGCTCGTCGACACGAGCCGGCACTTCATCGGCATGCCGGTGCTCAGGCACATCCTCGACGGCATGGCCTACAACAAAATGAACGTCGTCCACTGGCACATCGTCGACGACCACAGCTTTCCCTACCAGAGCCGCAAGTACCCCGAGTTCACGCGCGGCGCCTACCACGAGACCATGATCTACTCGCAGCAGGACGTCGCCGACGTCATCGAGTACGCGAGGCTGCGCGGCATTCGCGTCATGAGCGAGTTTGACACGCCCGGCCACACGGCGTCGTGGGGCGCCTCGCACCCAGAACTGCTGACCAGCTGTGGCGGCGTGCTGACGGGCAAGCTCGGGCCCATCAACCCCATCATCGACGACAACTACGACTTCATATTCAGCGTCTTCGACGAGATCGTGGAGGTTTTCCCGGACGCGTACGTGCACCTGGGCGGCGACGAGGTGAGCTTCGAGTGCTGGCAGAGCAACCGGAAAATCCTCGACTACATGAAGCGCCACAACCTCACGAAGTTCGAGGAGCTCGAGGAGCTCTACATCCAGCGCCTCATCAACAAGGTCGCGTCGCTGAAGGTGAAGCCGGTGGTGTGGCAGGAGGTGTACACGAACGGCGTGCGGCTGCCGAACGGAACTGTCGTGCACGTCTGGACCGGAAATCAGCGCAAGCTGCTCGCGAGGATAACGAGAGACAATTTGCCGGCTCTGCTGTCGGCCTGCTGGTACCTCGACCATCTGTCAACCGGCGGCGATTGGGTGAAATTTTACCACTGCGACCCGTGGGACTTTAACGGCACAGACGAGCAGAAGAGCCTTGTGCTCGGCGGAGAGGCCTGCATGTGGAGCGAAGTCGTCGACGACATCAACATTATTCAAAGGATTTTCCCGCGTGCGTGCGCAACGGCTGAGAAGTTGTGGTCGGCTGAGGAGGTGAGCGACGTTAACGACGCTATGCGACGCCTTGAAGAGCACTACTGCCGAATGAGGAGGCGAAACATCAGCGCACAGCCACCCAGCGGCCCCGGGTTTTGCTTAGAG
Protein: 406 (aa)
MDESYDLSVSEQSAVLESSSIWGILRGLESFSQLLYSSPDGRFLLINETTIYDEPRFKHRGLLVDTSRHFIGMPVLRHILDGMAYNKMNVVHWHIVDDHSFPYQSRKYPEFTRGAYHETMIYSQQDVADVIEYARLRGIRVMSEFDTPGHTASWGASHPELLTSCGGVLTGKLGPINPIIDDNYDFIFSVFDEIVEVFPDAYVHLGGDEVSFECWQSNRKILDYMKRHNLTKFEELEELYIQRLINKVASLKVKPVVWQEVYTNGVRLPNGTVVHVWTGNQRKLLARITRDNLPALLSACWYLDHLSTGGDWVKFYHCDPWDFNGTDEQKSLVLGGEACMWSEVVDDINIIQRIFPRACATAEKLWSAEEVSDVNDAMRRLEEHYCRMRRRNISAQPPSGPGFCLE
| Type | Start | End | Length |
| CDS |
228 |
426 |
199 |
| CDS |
582 |
739 |
158 |
| CDS |
1003 |
1418 |
416 |
| CDS |
2226 |
2541 |
316 |
| CDS |
2611 |
2726 |
116 |
| CDS |
2795 |
2807 |
13 |
| intron |
427 |
581 |
155 |
| intron |
740 |
1002 |
263 |
| intron |
1419 |
2225 |
807 |
| intron |
2542 |
2610 |
69 |
| intron |
2727 |
2794 |
68 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001650050 |
beta-hexosaminidase b [Aedes aegypti] gb|EAT43656.1| beta-hexosaminidase b [Aedes aegypti] |
1e-165 |
| InterPro |
IPR025705 |
Beta-hexosaminidase subunit alpha/beta |
|
| InterPro |
IPR015883 |
Glycoside hydrolase family 20, catalytic core |
|
| InterPro |
IPR015882 |
Glycosyl hydrolase family 20, domain 2 |
|
| InterPro |
IPR017853 |
Glycoside hydrolase, superfamily |
|
| InterPro |
IPR013781 |
Glycoside hydrolase, catalytic domain |
|
| Gene Ontology(BP) |
GO:0005975 |
carbohydrate metabolic process |
|
| Gene Ontology(MF) |
GO:0043169 |
cation binding |
|
| Gene Ontology(MF) |
GO:0004563 |
beta-N-acetylhexosaminidase activity |
|
| Gene Ontology(MF) |
GO:0004553 |
hydrolase activity, hydrolyzing O-glycosyl compounds |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF00728.17 |
Glycosyl hydrolase family 20, catalytic domain |
4.3e-82 |
| Pfam |
PF02838.10 |
Glycosyl hydrolase family 20, domain 2 |
1.8e-15 |
| Pfam |
PF14090.1 |
Helix-turn-helix domain |
0.12 |
| Pfam |
PF12691.2 |
Minor capsid protein from bacteriophage |
0.15 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. mellifera |
GB14634-PA |
| C. quinquefasciatus |
CPIJ016911 |
| C. quinquefasciatus |
CPIJ016910 |
| H. sapiens |
ENSP00000457521 |
| S. invicta |
SI2.2.0_00714 |
| A. gambiae |
AGAP010056 |
| H. sapiens |
ENSP00000268097 |
| A. aegypti |
AAEL004931 |
| T. castaneum |
TC010048 |
| H. sapiens |
ENSP00000261416 |
| H. melpomene |
HMEL014593-PA |
| N. vitripennis |
NV17290-PA |
| N. vitripennis |
NV17289-PA |
| M. musculus |
ENSMUSG00000025232 |
| H. sapiens |
ENSP00000416187 |
| H. sapiens |
ENSP00000456489 |
| P. vanderplanki |
Pv.09982 |
| P. humanus |
PHUM387890-PA |
| B. mori |
BGIBMGA014116-TA |
| M. musculus |
ENSMUSG00000021665 |
| H. sapiens |
ENSP00000426285 |
| H. sapiens |
ENSP00000457125 |
| H. sapiens |
ENSP00000455114 |
| B. mori |
BGIBMGA004194-TA |
| B. mori |
BGIBMGA014115-TA |
| T. castaneum |
TC008777 |
| D. plexippus |
DPOGS202913PA |
| T. castaneum |
TC008778 |