MidgeBase gene description page [Pn.16006]
Outline
| Gene ID | Pn.16006 |
| Type | Protein coding gene |
| Scaffold | PnScaf35117 |
| Start | 227 |
| End | 3033 |
| Direction | + |
Sequence
Transcript: 1830 (bp)
ATGCGTGTGTCTAAAATGAGCAGTGAAGAGGTGAACTACAAGCGACCGACGTGGACGAAGGGAACGGATTTTCTGATGAGCTGCATTTCGCTCTCAGTCGGTCTTGGCAACATCTGGAGATTTCCCTTCACCGCATTCGAAAACGGAGGGGCGACGTTTATTTTCGTCTACATCGTGGTGCTCTTTTTCATCGGAAAGCCCTTCTACTTTCTCGAGATGATAATTGGCCAATTTACCTCGTGCGGTTCCATAAGGGCACTGGAAATCATTCCGCTGATGAAAGGTGTCGCATTTGGCCAGCAAATTGCATCGGCGACCATCACAAGCTACTATAGCTCAATCATCGCCCTGACACTCTTCTACTTTATTCAGTCATTCCGCAGCACTTTGCCGTGGACCGAATGTCCAGAACACTTTAACTCCTCATGCGTACCTTCGAATGCCACTCAAAAGTTCAGCAATTCATCGCGGAGCAGCACAGAAATTTACTTCTATCATGAAGTGATGCGTCAGAAGGATGACATTTCAGACGGAATCGGATCGCCTGATTGGCGATTATCACTCTGTCTGTTTGTCTCGTGGCTCTGTGTCTTCCTGTCAATCATCAAGAGTATCAAGAGCTCGGGAAAGCTGTCGTATTTCTTTGCACTCTTCCCTTACGTCGTCCTCTTTGCACTGCTCATTCGTGCGTGCACACTCGAGGGATCAATCAATGGCATCATCTATTTCATCAAGCCCGACCTATCGAAGATGTTCAATCCTATTGTTTGGTATAATGCCGTCGTGCAGCTGTTCTTTTCGCTTGCCTTGGGAACTGGCACGGTTCTCATGTACTCTGGGTATAATAAATTTGACCGGAACATCTACAGAGACGCAATGCTTGTTAGCATGATAGACGCGTGCACGAGCCTGCTGGCCGGATTCACGATATTCGCCATTCTCGGCAATTTGGCGCACAACCTCGGCGTCGACGACATCGGGAAGGTGGTTAAGGGGGGTCATGGATTGGCGTTCTTCAGCTTTCCCGAGGCAATTTCCAAAATGAGCGGATGGTATTGGCCGCAGATTATGTCGGTCATATTTTTCTTCATGCTGTTCGTTCTCGGCGTGGGGTCGGCCGTCGGCCTCGTTAGCAACATCACGACCAACTTGAAGGATGCCTTTCCGATGTGCGCCCAGTGGAAAATTGCCGGTGCGTGCTCGGCGTTTGGGTTCCTCATCGGACTTCTGTACATTACGCGCGGCGGCATGCATGTCCTTTCTATCGCCGACTATTTCGGCGGAACGCTGCTCGTCTTCTTCCTCGCAACGCTCGAGATTGTCGGTGTGCTGTGGATCTACGGGTTGGAAAATTTTTCATGGGACGTCGAGTTCATGCTGAAGCGAAAGATTTCGTGCTTCTGGCGAGTGAGTTGGCTCCTTGTGATGCCCTTCTTCATGATCAGCATCTCGGTTTATTTGATCGTAAAGCTTGAGAACCCGAAAATCGATGGACTGCATGAGTTTCCGATGTATGCGCTCGTCAGCGGTTGGGGATTGTTCACGGTCGGGTGTCTGCAAACTTTCTTGTGGGTTCTCCTCCACTTTTTGAGGTACCGAAAGGTGAAAGGTGAGAAGCCGAGTTTCGGAAGTTTTCTGGTGAGTAAGAACGAAAGTTGGGGCCCGAAAAGTGCGGAAATCAGAGAGCGATGGGAGAACTACCGAGACGAATTGCAACTTCGGAAGATGATTTTCGTTCGGAAGCACAAAGTGCCGTGGCTCATTCAGAAGTCGTGGATTATCACTGGAAACTATCCCGTTGGCATAACGAAAGGCTTACACAAGTTTATG
Protein: 610 (aa)
MRVSKMSSEEVNYKRPTWTKGTDFLMSCISLSVGLGNIWRFPFTAFENGGATFIFVYIVVLFFIGKPFYFLEMIIGQFTSCGSIRALEIIPLMKGVAFGQQIASATITSYYSSIIALTLFYFIQSFRSTLPWTECPEHFNSSCVPSNATQKFSNSSRSSTEIYFYHEVMRQKDDISDGIGSPDWRLSLCLFVSWLCVFLSIIKSIKSSGKLSYFFALFPYVVLFALLIRACTLEGSINGIIYFIKPDLSKMFNPIVWYNAVVQLFFSLALGTGTVLMYSGYNKFDRNIYRDAMLVSMIDACTSLLAGFTIFAILGNLAHNLGVDDIGKVVKGGHGLAFFSFPEAISKMSGWYWPQIMSVIFFFMLFVLGVGSAVGLVSNITTNLKDAFPMCAQWKIAGACSAFGFLIGLLYITRGGMHVLSIADYFGGTLLVFFLATLEIVGVLWIYGLENFSWDVEFMLKRKISCFWRVSWLLVMPFFMISISVYLIVKLENPKIDGLHEFPMYALVSGWGLFTVGCLQTFLWVLLHFLRYRKVKGEKPSFGSFLVSKNESWGPKSAEIRERWENYRDELQLRKMIFVRKHKVPWLIQKSWIITGNYPVGITKGLHKFM
| Type | Start | End | Length |
| CDS |
227 |
235 |
9 |
| CDS |
692 |
801 |
110 |
| CDS |
861 |
1024 |
164 |
| CDS |
1081 |
1291 |
211 |
| CDS |
1398 |
1772 |
375 |
| CDS |
2007 |
2202 |
196 |
| CDS |
2266 |
3030 |
765 |
| intron |
236 |
691 |
456 |
| intron |
802 |
860 |
59 |
| intron |
1025 |
1080 |
56 |
| intron |
1292 |
1397 |
106 |
| intron |
1773 |
2006 |
234 |
| intron |
2203 |
2265 |
63 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002059515 |
GJ14810 [Drosophila virilis] sp|B4MEG2.1|NAAT1_DROVI RecName: Full=Sodium-dependent nutrient amino acid transporter 1 gb|EDW62937.1| GJ14810 [Drosophila virilis] |
1e-160 |
| InterPro |
IPR000175 |
Sodium:neurotransmitter symporter |
|
| Gene Ontology(BP) |
GO:0006836 |
neurotransmitter transport |
|
| Gene Ontology(CC) |
GO:0016021 |
integral to membrane |
|
| Gene Ontology(MF) |
GO:0005328 |
neurotransmitter:sodium symporter activity |
|
| Pfam |
PF00209.13 |
Sodium:neurotransmitter symporter family |
1.4e-140 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.07893 |
| Pn.10655 |
| Pn.01071 |
| Pn.01072 |
| Pn.03776 |
| Pn.03777 |
Orthologous genes
| Species |
Gene ID |
| A. mellifera |
GB15100-PA |
| D. melanogaster |
FBgn0034381 |
| C. quinquefasciatus |
CPIJ019019 |
| A. aegypti |
AAEL003619 |
| A. mellifera |
GB13257-PA |
| D. melanogaster |
FBgn0028886 |
| C. quinquefasciatus |
CPIJ020187 |
| C. quinquefasciatus |
CPIJ012067 |
| A. aegypti |
AAEL015287 |
| P. vanderplanki |
Pv.02853 |
| A. mellifera |
GB18422-PA |
| A. gambiae |
AGAP010857 |
| C. quinquefasciatus |
CPIJ019018 |
| D. plexippus |
DPOGS204331PA |
| A. gambiae |
AGAP010861 |
| C. quinquefasciatus |
CPIJ012063 |
| S. invicta |
SI2.2.0_00209 |
| T. castaneum |
TC006379 |
| S. invicta |
SI2.2.0_02913 |
| P. vanderplanki |
Pv.07765 |
| C. quinquefasciatus |
CPIJ019020 |
| P. vanderplanki |
Pv.13867 |
| P. vanderplanki |
Pv.07766 |
| C. quinquefasciatus |
CPIJ012066 |
| A. aegypti |
AAEL008424 |
| A. aegypti |
AAEL003640 |
| C. quinquefasciatus |
CPIJ012056 |
| A. aegypti |
AAEL003641 |
| C. quinquefasciatus |
CPIJ012065 |
| H. melpomene |
HMEL004634-PA |
| A. aegypti |
AAEL003626 |
| P. vanderplanki |
Pv.07768 |
| A. gambiae |
AGAP010865 |
| C. quinquefasciatus |
CPIJ012055 |
| D. plexippus |
DPOGS204332PA |
| P. vanderplanki |
Pv.07767 |
| D. melanogaster |
FBgn0035969 |
| A. aegypti |
AAEL003627 |
| P. humanus |
PHUM294590-PA |
| B. mori |
BGIBMGA007228-TA |
| D. melanogaster |
FBgn0033708 |
| T. castaneum |
TC006378 |
| D. melanogaster |
FBgn0033443 |
| D. melanogaster |
FBgn0029762 |
| A. aegypti |
AAEL003624 |
| A. aegypti |
AAEL003638 |
| C. quinquefasciatus |
CPIJ019526 |
| A. gambiae |
AGAP010860 |
| N. vitripennis |
NV50399-PA |