MidgeBase gene description page [Pn.15958]
Outline
| Gene ID | Pn.15958 |
| Type | Protein coding gene |
| Scaffold | PnScaf34516 |
| Start | 2533 |
| End | 3183 |
| Direction | + |
Sequence
Transcript: 591 (bp)
ATGTTTACCAGCAAATTATTGGGCTTAGCTAGGAGCACAATAGCTGCAAATCAGTTGTCAAATATTTTCCAAAAATGCACAATATCCTCATCGCCTGCACTTCTAAACAAAATATCGACACCACAATCGCCTCAACCAATCGCAAAATATGACGAGAGCAGAGATCCGGTGAAGAACATCAACGAGTTGCTGAAGAAAGACGAGGCGGGGAGACTTTTCGCTGTCGTCCAAATATGCGGCAAACAATTCAAAATCACAGCAGGCGACGTCATTTTGATCGAGGGCCACTGGCCGCCCTCAAACGGGGATGAACTTCGGCTGGAGAAAGTGCTTTTATGCGGGTCACAAGACTTTACGCTCGTCGGCAGGCCGATTCTGCAGAAGGGACTCGTCGACGTTCAAGCAACAGTCATCGAGAAGTCGCTGTCACACACGAGAACGCACTTCAAGTTCAAGAAACGCAAGCAGTACAGAAGAATCAACTTCCAGCGCCAAATCACCACAATGCTGCGGATAAATTCCATAGAGATCACAAACTACGTGGACAGCCTTGAGAAGGCGCAGCCTGAAAGCTTAGAAAATGTCTTTTAT
Protein: 197 (aa)
MFTSKLLGLARSTIAANQLSNIFQKCTISSSPALLNKISTPQSPQPIAKYDESRDPVKNINELLKKDEAGRLFAVVQICGKQFKITAGDVILIEGHWPPSNGDELRLEKVLLCGSQDFTLVGRPILQKGLVDVQATVIEKSLSHTRTHFKFKKRKQYRRINFQRQITTMLRINSIEITNYVDSLEKAQPESLENVFY
| Type | Start | End | Length |
| CDS |
2533 |
2593 |
61 |
| CDS |
2651 |
3180 |
530 |
| intron |
2594 |
2650 |
57 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001865900 |
39S ribosomal protein L21, mitochondrial [Culex quinquefasciatus] gb|EDS42464.1| 39S ribosomal protein L21, mitochondrial [Culex quinquefasciatus] |
4e-48 |
| InterPro |
IPR001787 |
Ribosomal protein L21 |
|
| Gene Ontology(BP) |
GO:0006412 |
translation |
|
| Gene Ontology(CC) |
GO:0005840 |
ribosome |
|
| Gene Ontology(CC) |
GO:0005622 |
intracellular |
|
| Gene Ontology(MF) |
GO:0003723 |
RNA binding |
|
| Gene Ontology(MF) |
GO:0003735 |
structural constituent of ribosome |
|
| Pfam |
PF00829.16 |
Ribosomal prokaryotic L21 protein |
2.8e-22 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000457859 |
| H. sapiens |
ENSP00000445009 |
| A. aegypti |
AAEL003142 |
| H. sapiens |
ENSP00000438837 |
| H. sapiens |
ENSP00000354580 |
| D. plexippus |
DPOGS205944PA |
| D. melanogaster |
FBgn0036853 |
| T. castaneum |
TC007683 |
| A. mellifera |
GB20097-PA |
| H. sapiens |
ENSP00000442243 |
| S. invicta |
SI2.2.0_13821 |
| M. musculus |
ENSMUSG00000024829 |
| H. sapiens |
ENSP00000456520 |
| P. vanderplanki |
Pv.10519 |
| H. melpomene |
HMEL008157-PA |
| H. sapiens |
ENSP00000389400 |
| N. vitripennis |
NV16279-PA |
| P. humanus |
PHUM456310-PA |
| B. mori |
BGIBMGA002829-TA |
| C. quinquefasciatus |
CPIJ015639 |
| C. quinquefasciatus |
CPIJ019444 |
| A. gambiae |
AGAP012030 |