MidgeBase gene description page [Pn.15953]
Outline
| Gene ID | Pn.15953 |
| Type | Protein coding gene |
| Scaffold | PnScaf34406 |
| Start | 10457 |
| End | 11020 |
| Direction | - |
Sequence
Transcript: 561 (bp)
ATGGAAGCTTTAGATTTATTAGAGAAACGAATTGACGCACTGAGCAATGCTCTTGGCATCGACAGCGAGGAGAAGAATGTGCAGCATGAGAATCTAACTGATTCAATCCTGTCAGCCAATACTCTGATAACAAGTGCCACAAGCGGTCGCGAAAAAGTCGGCGAAGTCATGAAAAGAACGAACGAACTGGAGACGTATCTCGATCCGGACTATTTAAACGACCAACAGAGCATTAAAATTAAGGAGGCGTACATCAACACAGTTGCCAACGACCTCGCGTCCAATTTCGAGATGCTCCAGAAAATCAAGTCGCTCGAGCCGACACTCGGTGCCGAGTACTTTCGCAGCATTCCCGACGTTTCTGAAAAGATCAGAGACATGAACGAGCAGCTCTCGACGAGCCAGCAGCAAAACGAGATGATCGAGGAGAGTTTGCTGATTTCCATGCAGAAATACAGCGAAATTCAAAACAACTTGAGAGACGCTCTGCAGCAATTGACCGAGCGATTGGACAAGTTCGAGGAGCGCGTCGAGAACGCGAAGAAAAAGGCAATAAGCGAA
Protein: 187 (aa)
MEALDLLEKRIDALSNALGIDSEEKNVQHENLTDSILSANTLITSATSGREKVGEVMKRTNELETYLDPDYLNDQQSIKIKEAYINTVANDLASNFEMLQKIKSLEPTLGAEYFRSIPDVSEKIRDMNEQLSTSQQQNEMIEESLLISMQKYSEIQNNLRDALQQLTERLDKFEERVENAKKKAISE
| Type | Start | End | Length |
| CDS |
10460 |
11020 |
561 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_312178 |
AGAP002742-PA [Anopheles gambiae str. PEST] gb|EAA07786.4| AGAP002742-PA [Anopheles gambiae str. PEST] |
1e-48 |
| InterPro |
IPR009991 |
Dynactin subunit p22 |
|
| Pfam |
PF03961.8 |
Protein of unknown function (DUF342) |
6.3 |
| Pfam |
PF01544.13 |
CorA-like Mg2+ transporter protein |
0.57 |
| Pfam |
PF09177.6 |
Syntaxin 6, N-terminal |
0.017 |
| Pfam |
PF10393.4 |
Trimeric coiled-coil oligomerisation domain of matrilin |
0.42 |
| Pfam |
PF08702.5 |
Fibrinogen alpha/beta chain family |
6.7 |
| Pfam |
PF12725.2 |
Protein of unknown function (DUF3810) |
4.6 |
| Pfam |
PF07889.7 |
Protein of unknown function (DUF1664) |
0.032 |
| Pfam |
PF02050.11 |
Flagellar FliJ protein |
0.016 |
| Pfam |
PF00472.15 |
RF-1 domain |
0.11 |
| Pfam |
PF04210.8 |
Tetrahydromethanopterin S-methyltransferase, subunit G |
0.036 |
| Pfam |
PF11433.3 |
Protein of unknown function (DUF3198) |
0.037 |
| Pfam |
PF10279.4 |
Latarcin precursor |
2.6 |
| Pfam |
PF06667.7 |
Phage shock protein B |
4.4 |
| Pfam |
PF00261.15 |
Tropomyosin |
0.0035 |
| Pfam |
PF04356.7 |
Protein of unknown function (DUF489) |
1.8 |
| Pfam |
PF05957.8 |
Bacterial protein of unknown function (DUF883) |
0.067 |
| Pfam |
PF10498.4 |
Intra-flagellar transport protein 57 |
0.36 |
| Pfam |
PF08775.5 |
ParB family |
0.68 |
| Pfam |
PF07426.6 |
Dynactin subunit p22 |
9.9e-12 |
| Pfam |
PF13476.1 |
AAA domain |
7.3 |
| Pfam |
PF06009.7 |
Laminin Domain II |
6.9 |
| Pfam |
PF07200.8 |
Modifier of rudimentary (Mod(r)) protein |
0.6 |
| Pfam |
PF04156.9 |
IncA protein |
7.2 |
| Pfam |
PF02601.10 |
Exonuclease VII, large subunit |
7.5 |
| Pfam |
PF10167.4 |
Uncharacterised conserved protein |
8.7 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000259632 |
| P. humanus |
PHUM534860-PA |
| T. castaneum |
TC013895 |
| M. musculus |
ENSMUSG00000028447 |
| A. gambiae |
AGAP002742 |
| C. quinquefasciatus |
CPIJ013973 |
| D. melanogaster |
FBgn0010622 |
| A. mellifera |
GB18433-PA |
| N. vitripennis |
NV12799-PA |
| A. aegypti |
AAEL000050 |
| S. invicta |
SI2.2.0_14885 |
| P. vanderplanki |
Pv.06560 |