MidgeBase gene description page [Pn.15950]
Outline
| Gene ID | Pn.15950 |
| Type | Protein coding gene |
| Scaffold | PnScaf34406 |
| Start | 1688 |
| End | 3216 |
| Direction | - |
Sequence
Transcript: 1362 (bp)
ATGGAGAATATAGCGACGAATTTAGAGAAATTATCTGTTGACGAGACGGGGCAGGAAGCCAGTATTGAGGACGAAATGAAGTGGGGCATGCAGTTAGTTGAAATTTATCGTTTAGCATTAAAATTCTTTAAAGATAAGTCAGGAAAGGCAGTGCACCTCAGTTACGAGGATAATCTTAAGTTAGTTGCTCTGACGATGCAGGCAAGTCACGGACCAATAAGCCAACAAAAATTAGAACCATTAGGAGTATTTGACGTCATAGGACGCGACAGAAGAAACCAGTGGACGCTGCTGGGCGACATGACGAAGCTCCACGCAATGGAGGGATTCATCGACCTCCTTGACAAGAAGTGCGGCACCTTCAAGCCCTACATCGAAGCAATCAAAAAGGATCGCGAGGAGAAGCAACGACTCGAAGAGATTGAGCGAGCCAAAAAGGCGGAGCAGCAGGAGGTGGAGAGAAAGCGGGAAGAGGAGCAGCGGCTGCTCGAGAACGAGATGCATCGGGAGGAAATGCAGCGCAGAAAATTGCAGGACGCCCTCAACGAACAGACATTCTACCAGTTCAAGCAGTACGCTGAGAAACAGTTCCCGGGAAATCCCGACCAGCAAGCGGTCCTCATAAAGCAACTCCAGAACGAGCACTACCACCAGTATTTGCAGCAGCTTCAGTCGCAGTTCCAGCAGGGTGAGCTGGAGCTCGATGAGTCGCGAAACGTCGAGTCCTGCAAGGAGCAGGAGACGAGTTTAGTTGAGGAGAAGGACCAGTGCGATAGCGATAACGACTCCGAGGAATTCTGCACCGTTCAGCCAGCAAATATGTGGACGCGCAGCGACATCAAAGAGTTCAAGATGAACGTGGCGAAGGGAAAGGGTGACGGAGTGATTAGAATCGGACACGGCGACTGCGTCACGGTCCGCGTGCCGACGCTCGAAGGCGGCTCCAGCCTGTTCTGGGAATTCGCCACAGACAATTACGACATCGGCTTCGGCGTGTATTTCGAATGGGCGAAGCCAACCACAACGGAAGTGACCGTACACGTGAGCGAGTCGGACGACGAAATGGACGAGAACGACCTGGGCGAGAACGATGAGGATGAGGAGATAACGTGTGGTGGCGGCATAGGAATCGCCGATGACTTGGAGAGCGGAAGTCAAACTCAACTGCCGATAAAAGCCTCGTCACTGCTCGATCGACCTCCACTATCAATTATCGTACCGGTCTACAGGAGAGAGTGCCAGAACGAGGTTTACTGCGGCTCTCACAACTATCCGGGCCAGGGCACCTACTTACTAAAATTCGACAACTCATTCAGTCTTTGGCGAAGCAAAACTCTCTACTACTGCGTCTTTTACACACGA
Protein: 454 (aa)
MENIATNLEKLSVDETGQEASIEDEMKWGMQLVEIYRLALKFFKDKSGKAVHLSYEDNLKLVALTMQASHGPISQQKLEPLGVFDVIGRDRRNQWTLLGDMTKLHAMEGFIDLLDKKCGTFKPYIEAIKKDREEKQRLEEIERAKKAEQQEVERKREEEQRLLENEMHREEMQRRKLQDALNEQTFYQFKQYAEKQFPGNPDQQAVLIKQLQNEHYHQYLQQLQSQFQQGELELDESRNVESCKEQETSLVEEKDQCDSDNDSEEFCTVQPANMWTRSDIKEFKMNVAKGKGDGVIRIGHGDCVTVRVPTLEGGSSLFWEFATDNYDIGFGVYFEWAKPTTTEVTVHVSESDDEMDENDLGENDEDEEITCGGGIGIADDLESGSQTQLPIKASSLLDRPPLSIIVPVYRRECQNEVYCGSHNYPGQGTYLLKFDNSFSLWRSKTLYYCVFYTR
| Type | Start | End | Length |
| CDS |
1691 |
2808 |
1118 |
| CDS |
2889 |
2999 |
111 |
| CDS |
3084 |
3216 |
133 |
| intron |
2809 |
2888 |
80 |
| intron |
3000 |
3083 |
84 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001651890 |
hypothetical protein AaeL_AAEL006309 [Aedes aegypti] gb|EAT42117.1| conserved hypothetical protein [Aedes aegypti] |
1e-151 |
| InterPro |
IPR000582 |
Acyl-CoA-binding protein, ACBP |
|
| InterPro |
IPR009038 |
GOLD |
|
| InterPro |
IPR014352 |
FERM/acyl-CoA-binding protein, 3-helical bundle |
|
| Gene Ontology(BP) |
GO:0006810 |
transport |
|
| Gene Ontology(CC) |
GO:0016021 |
integral to membrane |
|
| Gene Ontology(MF) |
GO:0000062 |
fatty-acyl-CoA binding |
|
| Pfam |
PF00887.14 |
Acyl CoA binding protein |
1.8e-14 |
| Pfam |
PF13897.1 |
Golgi-dynamics membrane-trafficking |
5.8e-57 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| C. quinquefasciatus |
CPIJ019707 |
| P. vanderplanki |
Pv.09423 |
| P. humanus |
PHUM299220-PA |
| N. vitripennis |
NV10697-PA |
| A. gambiae |
AGAP003185 |
| A. mellifera |
GB13198-PA |
| D. plexippus |
DPOGS206690PA |
| T. castaneum |
TC007892 |
| A. aegypti |
AAEL006309 |
| M. musculus |
ENSMUSG00000034111 |
| H. sapiens |
ENSP00000216468 |
| D. melanogaster |
FBgn0031061 |
| S. invicta |
SI2.2.0_07896 |